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RPXD034692

RPXD034692 is container for one or more analyses. The general container metadata is provided below and the table under Dataset History provides links to the various reanalyses have been provided (if any) in this container.

Reanalysis Container Summary

Title	PXD019423-1 MS analysis of SARS-CoV2 proteins from patient samples [Reanalysis: PXD019423]
Description	We developed a simple, MS-based method to specifically detect SARS-CoV-2 proteins from gargle solution samples of COVID-19 patients. Our protocol consists of an acetone precipitation and tryptic digestion of proteins contained within the gargle solution, followed by a targeted MS analysis. Our methodology identifies unique peptides originating from SARS-CoV-2 nucleoprotein. Building on these promising initial results, faster MS protocols can now be developed as routine diagnostic tools for COVID-19 patients. https://biorxiv.org/cgi/content/short/2020.04.18.047878v1 [Original project description]
HostingRepository	jPOST
AnnounceDate	2023-04-02
AnnouncementXML	Submission_2023-04-02_06:18:45.611.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/RPXD034692
ReviewLevel	Non peer-reviewed dataset
DatasetOrigin	Reanalysis of PXD019423
RepositorySupport	Supported dataset by repository
PrimarySubmitter	jPOST reanalysis
SpeciesList	scientific name: Body Fluid or Substance; NCBI TaxID: C13236;
ModificationList	S-carboxamidomethyl-L-cysteine; unknown modification; L-methionine sulfoxide; unknown modification
Instrument	Orbitrap Fusion

Dataset History

Reanalysis	Revision	Datetime	Status	Title / ChangeLog Entry
	0	2022-06-19 17:29:49	ID requested
0	1	2023-04-02 06:18:45	announced	PXD019423-1 MS analysis of SARS-CoV2 proteins from patient samples [Reanalysis: PXD019423]

Publication List

no publication

no publication

Keyword List

submitter keyword: reanalysis, COVID-19, Mass spectrometry, Nucleoprotein, SARS-CoV-2

submitter keyword: reanalysis, COVID-19, Mass spectrometry, Nucleoprotein, SARS-CoV-2

Contact List

Yasushi Ishihama
lab head
jPOST reanalysis
contact affiliation	jPOST
dataset submitter

Full Dataset Link List

jPOST dataset URI
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.jpostdb.org/JPST001776/

jPOST dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.jpostdb.org/JPST001776/