⮝ Full datasets listing

RPXD034306-1

RPXD034306 is container for one or more analyses. The general container metadata is provided below and the table under Dataset History provides links to the various reanalyses have been provided (if any) in this container.

Reanalysis Container Summary

Title	JPST000087 Human Fibroblast cell_aHDF1388-P9 [Reanalysis: JPST000087]
Description	Proteome analyses of human fibroblast cell line (aHDF1388-P9) were carried out using a two-meter monolithic silica C18 capillary columns without prefractionation. Tryptic peptides from 4 Î¼g cell lysates were directly injected onto the 100 Î¼m i.d. monolithic silica-C18 column and an 8-h gradient was applied at 500 nL/min. Triplicate measurements were conducted and the merged results were searched against UniProt DB to identify peptides and proteins. The obtained results were filtered at 1% FDR thresholds by searching against the randomized decoy DB both at peptide and protein levels. This dataset with the PX complete submission format will be further used to generate a customized DB in this jPOST project. [Original project description]
HostingRepository	jPOST
AnnounceDate	2023-04-01
AnnouncementXML	Submission_2023-04-01_00:38:32.088.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/RPXD034306
ReviewLevel	Non peer-reviewed dataset
DatasetOrigin	Reanalysis of JPST000087
RepositorySupport	Supported dataset by repository
PrimarySubmitter	jPOST reanalysis
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	S-carboxamidomethyl-L-cysteine; L-methionine sulfoxide
Instrument	TripleTOF 5600

Dataset History

Reanalysis	Revision	Datetime	Status	Title / ChangeLog Entry
	0	2022-06-05 06:18:12	ID requested
0	1	2023-04-01 00:38:32	announced	JPST000087 Human Fibroblast cell_aHDF1388-P9 [Reanalysis: JPST000087]

Publication List

no publication

no publication

Keyword List

submitter keyword: reanalysis, shotgun proteomics, monolithic silica column, iPS cell, one-shot proteomics

submitter keyword: reanalysis, shotgun proteomics, monolithic silica column, iPS cell, one-shot proteomics

Contact List

Yasushi Ishihama
lab head
jPOST reanalysis
contact affiliation	jPOST
dataset submitter

Full Dataset Link List

jPOST dataset URI
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.jpostdb.org/JPST001636/

jPOST dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.jpostdb.org/JPST001636/