⮝ Full datasets listing
PXD081181-1
PXD081181 is an original dataset announced via ProteomeXchange.
Dataset Summary
| Title | A spatial atlas of the seaweed CO2 fixation machinery reveals a unique Rubisco condensation mechanism |
| Description | Dataset comprising pyrenoid enrichment and whole cell proteomics from Ulva sp. collected from Boggle Hole, North Yorkshire. Pyrenoid enrichment, F107, is triplicate data of pyrenoid enriched fraction normalised by protein content to corresponding lysate fractions. For whole cell mass spectrometry, freeze ground powder was dissolved in 5 percent SDS, 100 mM TEAB, pH 8.5 buffer and sonicated, 3 min processing time, 3s pulses at 30 percent amplitude using a micro tip and Misonix S 4000 sonicator. The lysate was centrifuged at 30,000 g for 30 minutes at 4 C and the supernatant extracted for analysis. A total of approx. 25 microg was used for analysis in each sample. |
| HostingRepository | MassIVE |
| AnnounceDate | 2026-07-27 |
| AnnouncementXML | Submission_2026-07-27_00:31:29.360.xml |
| DigitalObjectIdentifier | |
| ReviewLevel | Non peer-reviewed dataset |
| DatasetOrigin | Original dataset |
| RepositorySupport | Unsupported dataset by repository |
| PrimarySubmitter | Adam Dowle |
| SpeciesList | scientific name: Ulva; NCBI TaxID: 3118; |
| ModificationList | Methylthio; Oxidation; Acetyl |
| Instrument | timsTOF HT |
Dataset History
| Revision | Datetime | Status | ChangeLog Entry |
|---|---|---|---|
| 0 | 2026-07-16 03:29:21 | ID requested | |
| ⏵ 1 | 2026-07-27 00:31:29 | announced |
Publication List
| no publication |
Keyword List
| submitter keyword: Pyrenoid, Rubisco, seaweed, Ulva, SUPA1, carbon concentrating mechanism, DatasetType:Proteomics |
Contact List
| Luke Mackinder | |
|---|---|
| contact affiliation | University of York |
| contact email | luke.mackinder@york.ac.uk |
| lab head | |
| Adam Dowle | |
| contact affiliation | University of York |
| contact email | adam.dowle@york.ac.uk |
| dataset submitter | |
Full Dataset Link List
| MassIVE dataset URI |
| Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive-ftp.ucsd.edu/v13/MSV000102502/ |
