⮝ Full datasets listing
PXD080894-1
PXD080894 is an original dataset announced via ProteomeXchange.
Dataset Summary
| Title | IP-MS analysis of VvMYBPA1 and VvL-IdnDH in grapevine (Vitis vinifera) |
| Description | Affinity purification mass spectrometry (IP-MS) was performed to characterize proteins associated with VvMYBPA1 and VvL-IdnDH in Vitis vinifera. The dataset contains 12 Thermo RAW files, comprising control (CK) and overexpression (OE) groups for each protein, with three biological replicates per group. Peptides were analyzed by nanoLC coupled to an Orbitrap Astral mass spectrometer in data-dependent acquisition (DDA) mode. The mass spectrometry data were analyzed using Proteome Discoverer version 3.1.0. Database searching was performed using Trypsin (Full), allowing up to two missed cleavages, with a precursor mass tolerance of 10 ppm and a false discovery rate of 1 percent. Carbamidomethylation of cysteine was specified as a fixed modification, while oxidation of methionine and acetylation of the protein N-terminus were specified as variable modifications. |
| HostingRepository | MassIVE |
| AnnounceDate | 2026-07-11 |
| AnnouncementXML | Submission_2026-07-11_17:01:15.600.xml |
| DigitalObjectIdentifier | |
| ReviewLevel | Non peer-reviewed dataset |
| DatasetOrigin | Original dataset |
| RepositorySupport | Unsupported dataset by repository |
| PrimarySubmitter | Ruilin Li |
| SpeciesList | scientific name: Vitis vinifera; common name: wine grape; NCBI TaxID: 29760; |
| ModificationList | Carbamidomethyl |
| Instrument | Orbitrap Astral |
Dataset History
| Revision | Datetime | Status | ChangeLog Entry |
|---|---|---|---|
| 0 | 2026-07-11 16:55:39 | ID requested | |
| ⏵ 1 | 2026-07-11 17:01:16 | announced |
Publication List
| no publication |
Keyword List
| submitter keyword: IP-MS affinity purification mass spectrometry Vitis vinifera grapevine, DatasetType:Proteomics |
Contact List
| Xiping Wang | |
|---|---|
| contact affiliation | College of Horticulture, Northwest A & F University |
| contact email | xipingwang@nwafu.edu.cn |
| lab head | |
| Ruilin Li | |
| contact affiliation | Northwest A & F University |
| contact email | li004047@umn.edu |
| dataset submitter | |
Full Dataset Link List
| MassIVE dataset URI |
| Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive-ftp.ucsd.edu/v13/MSV000102450/ |
