PXD080844-1

PXD080844 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Shotgun and geLC MS/MS data of clonal enrichment culture BzS1
Description	Due to its high chemical stability, the biodegradation of benzene is the most challenging amongst hydrocarbons. While oxygen-dependent oxygenases are employed by aerobic bacteria to overcome the energy barrier, the mechanism of anaerobic benzene biodegradation is still enigmatic. The sulfate-reducing, clonal enrichment culture BzS1 is capable of benzene degradation under anoxic conditions. In addition, the alkylbenzene toluene may be used as sole source of carbon and energy. In this project, the protein complements of the soluble as well as membrane protein-enriched fractions of cells of strain BzS1 adapted to anaerobic growth with benzene or toluene, respectively, were studied.
HostingRepository	PRIDE
AnnounceDate	2026-09-07
AnnouncementXML	Submission_2026-09-07_04:23:28.919.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Lars Wöhlbrand
SpeciesList	scientific name: bacterium BzS1; NCBI TaxID: NEWT:3682081;
ModificationList	iodoacetamide derivatized residue
Instrument	Bruker Daltonics amaZon series

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2026-07-10 06:35:57	ID requested
⏵ 1	2026-09-07 04:23:30	announced

Publication List

10.1111/1462-2920.70394;
Musat F, W, ö, hlbrand L, Jarling R, Kube M, Musat N, Becker P, Bruns S, Reinhardt R, Amann R, Widdel F, Wilkes H, Rabus R, Putative Mechanisms for Initial Reaction of Anaerobic Benzene Degradation Presumably Involving a Flavoprotein. Environ Microbiol, 28(8):e70394(2026) [pubmed]

10.1111/1462-2920.70394;

Musat F, W, ö, hlbrand L, Jarling R, Kube M, Musat N, Becker P, Bruns S, Reinhardt R, Amann R, Widdel F, Wilkes H, Rabus R, Putative Mechanisms for Initial Reaction of Anaerobic Benzene Degradation Presumably Involving a Flavoprotein. Environ Microbiol, 28(8):e70394(2026) [pubmed]

Keyword List

submitter keyword: anaerobic benzene degradation, LC-MSMS,Shotgun and geLC MS/MS data of clonal enrichment culture BzS1 Keywords Strain BzS1

submitter keyword: anaerobic benzene degradation, LC-MSMS,Shotgun and geLC MS/MS data of clonal enrichment culture BzS1 Keywords Strain BzS1

Contact List

Ralf Rabus
contact affiliation	General and molecular microbiology, Institute for chemistry and biology of the marine environment (ICBM), Carl von Ossietzky University of Oldenburg, Oldenburg, Germany
contact email	rabus@icbm.de
lab head
Lars Wöhlbrand
contact affiliation	General and Molecular Microbiology
contact email	lars.woehlbrand@uni-oldenburg.de
dataset submitter

Full Dataset Link List

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PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2026/09/PXD080844

PRIDE project URI

Repository Record List

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