⮝ Full datasets listing
PXD079668-1
PXD079668 is an original dataset announced via ProteomeXchange.
Dataset Summary
| Title | Proteomics of cervical mineralized diaphragm in molar root-incisor malformation |
| Description | Peptides were resuspended in 0.1% formic acid and analyzed using a Q Exactive Orbitrap mass spectrometer (MS; Thermo Fisher Scientific) coupled to an Ultimate 3000 NanoLC system (Thermo Fisher Scientific). Peptide separation was performed using a C18 trap column and a PepMap RSLC C18 analytical column with a linear acetonitrile gradient. Data-dependent acquisition was used to select the top 10 most intense precursor ions for fragmentation. MS spectra were acquired at resolutions of 70,000 for MS1 and 17,500 for MS2 over a scan range of 400-2,000 m/z. Fragmentation was performed using higher-energy collisional dissociation with a normalised collision energy of 27%, and dynamic exclusion was set to 30 s. Raw MS files were analyzed with the Proteome Discoverer software ver. 2.5 (Thermo Fisher Scientific) using the UniProt Homo sapiens database. Peptide identification was performed using the SEQUEST HT (Thermo Fisher Scientific) search engine. Search parameters included a precursor mass tolerance of 10 ppm, a fragment mass tolerance of 0.02 Da, and up to two missed cleavages for trypsin. Identification was filtered at a false discovery rate (FDR) of <1%, with a minimum peptide length of six amino acids. |
| HostingRepository | MassIVE |
| AnnounceDate | 2026-06-13 |
| AnnouncementXML | Submission_2026-06-13_07:04:06.396.xml |
| DigitalObjectIdentifier | |
| ReviewLevel | Non peer-reviewed dataset |
| DatasetOrigin | Original dataset |
| RepositorySupport | Unsupported dataset by repository |
| PrimarySubmitter | Ju Ri Ye |
| SpeciesList | scientific name: Homo sapiens; common name: human; NCBI TaxID: 9606; |
| ModificationList | Lys->CamCys |
| Instrument | Q Exactive GC Orbitrap |
Dataset History
| Revision | Datetime | Status | ChangeLog Entry |
|---|---|---|---|
| 0 | 2026-06-13 01:42:16 | ID requested | |
| ⏵ 1 | 2026-06-13 07:04:06 | announced |
Publication List
| no publication |
Keyword List
| submitter keyword: Bioinformatics, Pediatric Dentistry, Dental anatomy, Tooth development, DatasetType:Proteomics |
Contact List
| Ju Ri Ye | |
|---|---|
| contact affiliation | Kyung Hee University |
| contact email | jjuri0303@gmail.com |
| lab head | |
| Ju Ri Ye | |
| contact affiliation | Kyung Hee University |
| contact email | jjuri0303@gmail.com |
| dataset submitter | |
Full Dataset Link List
| MassIVE dataset URI |
| Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive-ftp.ucsd.edu/v13/MSV000102143/ |
