⮝ Full datasets listing
PXD077657-1
PXD077657 is an original dataset announced via ProteomeXchange.
Dataset Summary
| Title | Tiny Hopes -- Assessing Protein Preservation in Collagen-Depleted Bones |
| Description | Two sets of searches with the following modification: 1. deamidation (N), deamidation (Q), hydroxyproline (P); 2. Pyro-Glu (Q), and Pyro-Glu (E). THe same decoy and contaminants settings were used as in original search. Validation: always left default in FragPipe, MS booster, Philiosopher, percolator algorithms (95% accurate). Fixed modifications: default, only the cstine is modified. Cleavage: semi-tryptic. The missed cleavages were increase to 3. Number of unique peptides: set to 1. For paper, currently under review |
| HostingRepository | MassIVE |
| AnnounceDate | 2026-06-12 |
| AnnouncementXML | Submission_2026-06-12_08:06:23.894.xml |
| DigitalObjectIdentifier | |
| ReviewLevel | Non peer-reviewed dataset |
| DatasetOrigin | Original dataset |
| RepositorySupport | Unsupported dataset by repository |
| PrimarySubmitter | Emese Vegh |
| SpeciesList | scientific name: Bovidae; NCBI TaxID: 9895; scientific name: Capra; NCBI TaxID: 9922; scientific name: Sus scrofa; common name: pig; NCBI TaxID: 9823; scientific name: Mammalia sp. MMA-2019; NCBI TaxID: 2598437; |
| ModificationList | Deamidated; 3-hydroxy-L-proline; Glu->pyro-Glu; Gln->pyro-Glu |
| Instrument | Orbitrap Astral |
Dataset History
| Revision | Datetime | Status | ChangeLog Entry |
|---|---|---|---|
| 0 | 2026-04-27 05:59:27 | ID requested | |
| ⏵ 1 | 2026-06-12 08:06:24 | announced |
Publication List
| no publication |
Keyword List
| submitter keyword: archaeological bone, collagen-depleted, ancient collagen, non-collagenous proteins, DatasetType:Proteomics |
Contact List
| Emese Vegh | |
|---|---|
| contact affiliation | University of Vienna |
| contact email | emese.vegh@univie.ac.at |
| lab head | |
| Emese Vegh | |
| contact affiliation | University of Vienna |
| contact email | emese.vegh@univie.ac.at |
| dataset submitter | |
Full Dataset Link List
| MassIVE dataset URI |
| Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive-ftp.ucsd.edu/v12/MSV000101610/ |
