⮝ Full datasets listing
PXD074968-1
PXD074968 is an original dataset announced via ProteomeXchange.
Dataset Summary
| Title | Pseudomonas putida KT2440 FEM proteomics |
| Description | Proteomics on P. putida grown on fungal exudate mimic (FEM) and phytate: 12 cell pellets and 3 supernatants. Cell pellets are from 4 time points (3, 5, 8, 24h) x 3 reps. Supernatant/growth solution 0.5x FEM+ 300 um phytate, 24hr x 3 reps. P. putida cultures were spun to obtain pellets and supernatants. Cell pellets were washed and supernatant was lyophilized. Proteins were extracted using a chloroform:methanol extraction, reconstituted, diluted to 5 mM, and digested with trypsin. Digested proteins were cleaned up using solid phase extraction. Data was searched with DIA-NN using PNNL's DMS Processing pipeline. |
| HostingRepository | MassIVE |
| AnnounceDate | 2026-07-20 |
| AnnouncementXML | Submission_2026-07-20_19:45:42.540.xml |
| DigitalObjectIdentifier | |
| ReviewLevel | Non peer-reviewed dataset |
| DatasetOrigin | Original dataset |
| RepositorySupport | Unsupported dataset by repository |
| PrimarySubmitter | Matthew Monroe |
| SpeciesList | scientific name: Pseudomonas putida KT2440; NCBI TaxID: 160488; |
| ModificationList | Oxidation; Acetyl |
| Instrument | Orbitrap Astral |
Dataset History
| Revision | Datetime | Status | ChangeLog Entry |
|---|---|---|---|
| 0 | 2026-02-26 18:23:26 | ID requested | |
| ⏵ 1 | 2026-07-20 19:45:43 | announced |
Publication List
| no publication |
Keyword List
| submitter keyword: cell pellets, supernatants, FEM, DatasetType:Proteomics |
Contact List
| Sneha Couvillion | |
|---|---|
| contact affiliation | Pacific Northwest National Laboratory |
| contact email | sneha.couvillion@pnnl.gov |
| lab head | |
| Matthew Monroe | |
| contact affiliation | Pacific Northwest National Laboratory |
| contact email | matthew.monroe@pnnl.gov |
| dataset submitter | |
Full Dataset Link List
| MassIVE dataset URI |
| Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive-ftp.ucsd.edu/v12/MSV000100991/ |
