PXD071646 is an
original dataset announced via ProteomeXchange.
Dataset Summary
| Title | Identification of potential Rsf1 promoter-interacting proteins in rice (Oryza sativa Nipponbare) roots during nematode infection |
| Description | We performed DNA-pull down experiments using biotin-labeled and unlabeled promoter sequences of Rsf1, a susceptibility factor in rice against root-knot nematode infection, to capture interacting nuclear proteins from rice roots at different time points post-infection (0, 1, and 3 days). Captured proteins were analyzed by LC-MS/MS to identify potential transcriptional regulators or binding partners of the Rsf1 promoter. |
| HostingRepository | PRIDE |
| AnnounceDate | 2025-12-07 |
| AnnouncementXML | Submission_2025-12-07_00:27:16.082.xml |
| DigitalObjectIdentifier | |
| ReviewLevel | Peer-reviewed dataset |
| DatasetOrigin | Original dataset |
| RepositorySupport | Unsupported dataset by repository |
| PrimarySubmitter | Jingwen Yu |
| SpeciesList | scientific name: Oryza sativa (Rice); NCBI TaxID: NEWT:4530; |
| ModificationList | biotinylated residue |
| Instrument | Q Exactive |
Dataset History
| Revision | Datetime | Status | ChangeLog Entry |
|---|
| 0 | 2025-12-05 10:36:34 | ID requested | |
| ⏵ 1 | 2025-12-07 00:27:16 | announced | |
Publication List
| Dataset with its publication pending |
Keyword List
| submitter keyword: LC-MS/MS,nuclear proteins.,promoter pull-down,root-knot nematode,DNA-protein interaction,rice |
Contact List
| Jingwen Yu |
|---|
| contact affiliation | State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China |
| contact email | jingwenyu1996@163.com |
| lab head | |
| Jingwen Yu |
|---|
| contact affiliation | State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences |
| contact email | jingwenyu1996@163.com |
| dataset submitter | |
Full Dataset Link List
Dataset FTP location
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| PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD071646
- Label: PRIDE project
- Name: Identification of potential Rsf1 promoter-interacting proteins in rice (Oryza sativa Nipponbare) roots during nematode infection
