PXD071266 is an
original dataset announced via ProteomeXchange.
Dataset Summary
| Title | PeptideVisualizer: a novel software solution for PROTOMAP analysis |
| Description | PeptideVisualizer is an open-source software for PROTOMAP analysis, offering an intuitive graphical user interface and command-line compatibility. The software processes mass spectrometry data output from MaxQuant to visualize protein migration in polyacrylamide gel electrophoresis and sequence coverage. In addition, it integrates information regarding protein secondary structure and features from the UniProt database to visualize them within comprehensive peptographs. These features allow us to assess the occurrence of a proteolytic event. The key advantages of PeptideVisualizer include the integration of quantitative information, handling of multiple experiments with biological replicates, and the introduction of a novel mismatch factor—a metric designed to rapidly identify proteolytic events. Herein, the software was validated in an apoptosis-related dataset, demonstrating its effectiveness and usefulness in large-scale proteomic data analysis. |
| HostingRepository | PRIDE |
| AnnounceDate | 2026-06-08 |
| AnnouncementXML | Submission_2026-06-07_17:01:48.245.xml |
| DigitalObjectIdentifier | |
| ReviewLevel | Peer-reviewed dataset |
| DatasetOrigin | Original dataset |
| RepositorySupport | Unsupported dataset by repository |
| PrimarySubmitter | Matej Kolarič |
| SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: NEWT:9606; |
| ModificationList | acetylated residue; monohydroxylated residue; iodoacetamide derivatized residue |
| Instrument | LTQ Orbitrap Velos |
Dataset History
| Revision | Datetime | Status | ChangeLog Entry |
|---|
| 0 | 2025-11-26 08:31:44 | ID requested | |
| ⏵ 1 | 2026-06-07 17:01:49 | announced | |
Publication List
| Kolari, č M, Ivanovski S, Sever T, Turk B, Fonovi, ć M, PeptideVisualizer: A Novel Software Solution for PROTOMAP Analysis. J Proteome Res, 25(5):2591-2597(2026) [pubmed] |
| 10.1021/acs.jproteome.5c01209; |
Keyword List
| submitter keyword: open-source software, mass spectrometry, MaxQuant, proteolysis, PROTOMAP,PeptideVisualizer |
Contact List
| Marko Fonović |
|---|
| contact affiliation | Jožef Stefan Institute, Department of Biochemistry, Molecular and Structural Biology, Jamova 39, SI-1000 Ljubljana, Slovenia |
| contact email | marko.fonovic@ijs.si |
| lab head | |
| Matej Kolarič |
|---|
| contact affiliation | Institut "Jožef Stefan" |
| contact email | matej.kolaric@ijs.si |
| dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2026/06/PXD071266 |
| PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD071266
- Label: PRIDE project
- Name: PeptideVisualizer: a novel software solution for PROTOMAP analysis
