⮝ Full datasets listing
PXD068824-1
PXD068824 is an original dataset announced via ProteomeXchange.
Dataset Summary
| Title | Protein-protein interactions of PID-3 in C. briggsae |
| Description | A mass spectrometry-based label-free proteomics analysis was performed to study the protein binders of PID-3 in C. briggsae. Anti-PID-3 and IgG control pull-downs were performed on C. briggsae. Proteins were digested in-gel by trypsin. Peptides were measured on a Q Exactive Plus Orbitrap mass spectrometer. Raw data files were processed by MaxQuant software package (version 2.1.3.0) using its integrated Andromeda search engine. Spectral data were searched against a target-decoy database consisting of the forward and reverse sequences of the UniProt C. briggsae (release 2023_02; 21,756 entries) and E. coli (release 2023_01; 5,064 entries) reference proteomes and a list of common contaminants. False discovery rate (FDR) was set to 1% at both peptide and protein levels. MaxLFQ quantification algorithm was employed. |
| HostingRepository | MassIVE |
| AnnounceDate | 2025-11-13 |
| AnnouncementXML | Submission_2025-11-13_07:17:26.270.xml |
| DigitalObjectIdentifier | |
| ReviewLevel | Non peer-reviewed dataset |
| DatasetOrigin | Original dataset |
| RepositorySupport | Unsupported dataset by repository |
| PrimarySubmitter | J Chen |
| SpeciesList | scientific name: Caenorhabditis briggsae; NCBI TaxID: 6238; |
| ModificationList | iodoacetamide - site C |
| Instrument | Q Exactive Plus |
Dataset History
| Revision | Datetime | Status | ChangeLog Entry |
|---|---|---|---|
| 0 | 2025-09-25 03:09:47 | ID requested | |
| ⏵ 1 | 2025-11-13 07:17:26 | announced |
Publication List
| no publication |
Keyword List
| submitter keyword: Protein-protein interactions, C. briggsae, PID-3, DatasetType:Proteomics |
Contact List
| Rene Ketting | |
|---|---|
| contact affiliation | Institute of Molecular Biology, Mainz |
| contact email | R.Ketting@imb-mainz.de |
| lab head | |
| J Chen | |
| contact affiliation | Institute of Molecular Biology |
| contact email | j.chen@imb-mainz.de |
| dataset submitter | |
Full Dataset Link List
| MassIVE dataset URI |
| Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive-ftp.ucsd.edu/v11/MSV000099274/ |
