⮝ Full datasets listing
PXD065470-1
PXD065470 is an original dataset announced via ProteomeXchange.
Dataset Summary
| Title | Catabolism of lignin-related methoxylated compounds in white-rot fungi utilizes a non-canonical extradiol dioxygenase |
| Description | Two white-rot fungi, Trametes versicolor and Gelatoporia subvermispora were cultivated to elucidate the intracellular catabolism of vanillate, a monomethoxylated aromatic compound. A four-enzyme pathway that converts vanillate into beta-ketoadipate, a metabolite that enters central carbon metabolism, was identified and biochemically validated. Samples were digested with trypsin, then analyzed by LC-MS/MS. Data was searched with MS-GF+ using PNNL's DMS Processing pipeline. |
| HostingRepository | MassIVE |
| AnnounceDate | 2026-04-27 |
| AnnouncementXML | Submission_2026-04-27_11:22:03.989.xml |
| DigitalObjectIdentifier | |
| ReviewLevel | Non peer-reviewed dataset |
| DatasetOrigin | Original dataset |
| RepositorySupport | Supported dataset by repository |
| PrimarySubmitter | Matthew Monroe |
| SpeciesList | scientific name: Trametes versicolor; NCBI TaxID: 5325; scientific name: Gelatoporia subvermispora; NCBI TaxID: 42742; |
| ModificationList | Oxidation |
| Instrument | Q Exactive HF-X |
Dataset History
| Revision | Datetime | Status | ChangeLog Entry |
|---|---|---|---|
| 0 | 2025-06-25 17:20:04 | ID requested | |
| ⏵ 1 | 2026-04-27 11:22:04 | announced |
Publication List
| no publication |
Keyword List
| submitter keyword: vanillate, beta-ketoadipate, multi-omics, systems biology, DatasetType:Proteomics |
Contact List
| Davinia Salvachua | |
|---|---|
| contact affiliation | National Renewable Energy Laboratory |
| contact email | davinia.salvachua@nrel.gov |
| lab head | |
| Matthew Monroe | |
| contact affiliation | Pacific Northwest National Laboratory |
| contact email | matthew.monroe@pnnl.gov |
| dataset submitter | |
Full Dataset Link List
| MassIVE dataset URI |
| Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive-ftp.ucsd.edu/v10/MSV000098330/ |
