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PXD064183-1

PXD064183 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleUrinary proteome and metabolome uncover tumor microenvironment and cellular metabolism changes of renal clear cell carcinoma
DescriptionWe applied LC-MS to profile the urine proteome and metabolome of 314 ccRCC, 341 healthy control and 49 kidney benign disease enrolled from three cohorts to a great depth. Functionally, we revealed significant changes of extracellular matrix (ECM) organization, complement and coagulation cascades, amino acid metabolism and fatty acid metabolism in ccRCC. Further cell origin annotation of cancer associated proteins revealed the potential role of myofibroblast cell, pericyte cell, vascular associated smooth muscle cell, and endothelial cell during ECM organization. Protein-protein correlation analysis suggested potential cell-cell communications in tumor TME, especially for tumor and myofibroblast cell. Finally, we discovered four potential urinary biomarkers, FGB,CILP, ITIH1, and GUCA2B, and established a model for ccRCC diagnosis with the AUC value of 0.84 in an external cohort. The model also showed discriminatory ability for ccRCC and benign with the AUC value of 0.75. Present study provided urinary molecular changes, which could reflect TME disorder and cellular metabolism reprogramming
HostingRepositoryiProX
AnnounceDate2025-05-22
AnnouncementXMLSubmission_2025-05-22_01:16:26.645.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterXiaoyan Liu
SpeciesList scientific name: Homo sapiens; NCBI TaxID: 9606;
ModificationListNo PTMs are included in the dataset
InstrumentOrbitrap Fusion; Orbitrap Exploris 480
Dataset History
RevisionDatetimeStatusChangeLog Entry
02025-05-22 01:15:41ID requested
12025-05-22 01:16:27announced
Publication List
Dataset with its publication pending
Keyword List
submitter keyword: Urine,proteomics,metabolomics, renal clear cell carcinoma
Contact List
Wei Sun
contact affiliationInstitute of Basic Medical Sciences, Chinese Academy of Medical Sciences, School of Basic Medicine, Peking Union Medical College
contact emailsunwei1018@sina.com
lab head
Xiaoyan Liu
contact affiliationInstitute of Basic Medical Sciences, Chinese Academy of Medical Sciences, School of Basic Medicine, Peking Union Medical College
contact emailxiaoyanliu.good@163.com
dataset submitter
Full Dataset Link List
iProX dataset URI