PXD062851-1

PXD062851 is an original dataset announced via ProteomeXchange.

Title	DIA-MS workflows for cyanobacterial proteomics
Description	In this project we introduce new workflows for the in-depth description of the cyanobacterial proteome. The mainstay features of these workflows are the improvement of sample cleanup and digestion through the use of single-pot solid phase-enhanced sample preparation (SP3), the introduction of a recently developed trifluoroaceticacid lysis strategy, and the application of library-free data independent acquisition.
HostingRepository	PRIDE
AnnounceDate	2025-09-15
AnnouncementXML	Submission_2025-09-14_16:44:12.385.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	David A. Russo
SpeciesList	scientific name: Synechococcus elongatus (strain PCC 7942) (Anacystis nidulans R2); NCBI TaxID: 1140;
ModificationList	No PTMs are included in the dataset
Instrument	timsTOF HT

Revision	Datetime	Status	ChangeLog Entry
0	2025-04-11 06:30:27	ID requested
⏵ 1	2025-09-14 16:44:13	announced

Russo DA, Schneidmadel FR, Zedler JAZ, Library-free data-independent acquisition mass spectrometry enables comprehensive coverage of the cyanobacterial proteome. Plant Physiol, 199(1):(2025) [pubmed]

10.1093/plphys/kiaf334;

submitter keyword: DIA-MS, Cyanobacteria, Synechococcus

David A. Russo
contact affiliation	Friedrich Schiller University Jena
contact email	david.russo@uni-jena.de
lab head
David A. Russo
contact affiliation	Friedrich Schiller University Jena
contact email	david.russo@uni-jena.de
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/09/PXD062851

PRIDE project URI

• PRIDE
  1. PXD062851
     1. Label: PRIDE project
     2. Name: DIA-MS workflows for cyanobacterial proteomics