PXD061425-1
PXD061425 is an original dataset announced via ProteomeXchange.
Dataset Summary
Title | Structure-guided development of chemically tailored peptide binders of RNF43/ZNRF3 to enable versatile design of membrane protein-targeting PROTACs |
Description | Targeted membrane protein degradation using cell surface E3 ligases RNF43/ZNRF3 via proteolysis targeting chimeras (PROTACs) represents an effective strategy for treating membrane drug targets that cannot be fully inhibited using traditional inhibitors. Several ingenious chimeras have been developed to tether RNF43/ZNRF3 to target membrane proteins, resulting in the degradation of targets at sub-nanomolar concentrations both in vitro and in vivo. However, currently available RNF43/ZNRF3 binders are genetically encoded and have poor plasticity, which limits the design and promotion of such PROTACs. Here, we exploited the AlphaFold-predicted complex structures of ligand-bound RNF43/ZNRF3 and developed a class of chemically tailored peptide binders for ZNRF3/RNF43. With these peptide binders that can be conveniently prepared by de novo peptide synthesis, we established a new membrane protein degradation platform that allows versatile modular design and targeted degradation of clinically relevant membrane proteins, i.e. PD-L1 and EGFR. This study presents a new subtype within the PROTAC field to develop therapeutic peptides targeting membrane proteins. |
HostingRepository | iProX |
AnnounceDate | 2025-03-04 |
AnnouncementXML | Submission_2025-03-03_19:34:22.306.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Yicheng Weng |
SpeciesList | scientific name: Homo sapiens; NCBI TaxID: 9606; |
ModificationList | iodoacetamide derivatized residue; methionine oxidation with neutral loss of 64 Da |
Instrument | timsTOF Pro |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
---|---|---|---|
0 | 2025-03-03 19:34:06 | ID requested | |
⏵ 1 | 2025-03-03 19:34:23 | announced |
Publication List
Cui J, Zheng Q, Weng Y, Zhai X, Su Z, Du Y, Wei X, Yu Y, Qu Q, Pan M, Structure-Guided Development of Chemically Tailored Peptide Binders of RNF43/ZNRF3 to Enable Versatile Design of Membrane Protein-Targeting PROTACs. Angew Chem Int Ed Engl, 64(19):e202501488(2025) [pubmed] |
Keyword List
submitter keyword: PROTAC, RSPO, PDL1 |
Contact List
Man Pan | |
---|---|
contact affiliation | Shanghai Jiao Tong University |
contact email | panman@sjtu.edu.cn |
lab head | |
Yicheng Weng | |
contact affiliation | Shanghai Jiao Tong University |
contact email | wengyc12@qq.com |
dataset submitter |
Full Dataset Link List
iProX dataset URI |