PXD060954-1

PXD060954 is an original dataset announced via ProteomeXchange.

Title	Proteome profiling of Akkermansia muciniphila, Bifidobacterium longum, and Bifidobacterium breve in different nutrient environments
Description	To understand how glycans influence the growth of probiotic strains in monocultures and communities, we characterized the growth and perform proteome profiling of 3 major probiotics, A. muciniphila (AM) BAA-835, B. breve (BB) JCM1192, and B. longum (BL) JCM1217 in monocultures and co-cultures grown in media with monosaccharides (Glucose & GlcNAc), Mucin, or Arabinoxylan. For the proteomic file annotations, A refers to AM monoculture, B refers to BB monoculture, and L referes to BL monoculture, AL refers to AM+BL co-culture, AB refers to AM+BB co-culture. The letter following the underline specify the media: g refers to Glc+GlcNAc, m refers to mucin, ax refers to arabinoxylan. If there is no underline following the species annotations, the cultures were grown in the base media only. Numbers following the letters specify biological replicates.
HostingRepository	PRIDE
AnnounceDate	2025-09-24
AnnouncementXML	Submission_2025-09-24_07:04:28.991.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Jordy Evan Sulaiman
SpeciesList	scientific name: Akkermansia muciniphila ATCC BAA-835; NCBI TaxID: 349741;
ModificationList	No PTMs are included in the dataset
Instrument	timsTOF Pro

Revision	Datetime	Status	ChangeLog Entry
0	2025-02-19 05:12:01	ID requested
⏵ 1	2025-09-24 07:04:29	announced

10.3389/FMICB.2025.1666747;

submitter keyword: Arabinoxylan, Bifidobacterium breve, Co-culture, Probiotics, Bifidobacterium longum,Akkermansia muciniphila, Mucin

Henry Lam
contact affiliation	Chemical and Biological Engineering, Hong Kong University of Science and Technology (HKUST)
contact email	kehlam@ust.hk
lab head
Jordy Evan Sulaiman
contact affiliation	The Hong Kong University of Science and Technology (HKUST)
contact email	jesulaiman@connect.ust.hk
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/09/PXD060954

PRIDE project URI

• PRIDE
  1. PXD060954
     1. Label: PRIDE project
     2. Name: Proteome profiling of Akkermansia muciniphila, Bifidobacterium longum, and Bifidobacterium breve in different nutrient environments