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PXD057731-1

PXD057731 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitlePTMsite-Finder supports DIA-NN-based PTM DIA proteomics
Descriptionwe developed PTMsite-Finder, a user-friendly graphical interface software tool designed to report and quantify multiple PTM sites directly from DIA-NN outputs. We validated PTMsite-Finder’s phosphosite quantification accuracy for phosphoproteomics DIA-MS data and demonstrated its versatility in processing various PTM types, including ubiquitinomics, acetylomics, and biotinylation diaPASEF data. Additionally, PTMsite-Finder outputs are compatible with kinase prediction and PTM site motif analysis tools. Altogether, PTMsite-Finder is a robust and versatile tool for analyzing DIA-NN outputs across multiple types of DIA-MS data.
HostingRepositoryiProX
AnnounceDate2024-11-11
AnnouncementXMLSubmission_2024-11-11_00:15:37.572.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterChuanqi Zhong
SpeciesList scientific name: Homo sapiens; NCBI TaxID: 9606;
ModificationListNo PTMs are included in the dataset
InstrumentOrbitrap Fusion Lumos; timsTOF Pro
Dataset History
RevisionDatetimeStatusChangeLog Entry
02024-11-11 00:15:27ID requested
⏵ 12024-11-11 00:15:37announced
Publication List
Dataset with its publication pending
Keyword List
submitter keyword: Post-translational modifications, DIA, DIA-NN
Contact List
Chuanqi Zhong
contact affiliationXiamen University
contact emailzhongcq@xmu.edu.cn
lab head
Chuanqi Zhong
contact affiliationXiamen University
contact emailzhongcq@xmu.edu.cn
dataset submitter
Full Dataset Link List
iProX dataset URI

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