PXD057215-1

PXD057215 is an original dataset announced via ProteomeXchange.

Title	De novo assembled databases allow species-specific protein-based stable isotope probing of microbiomes without prior knowledge of the community composition
Description	Dataset generated and used in "De novo assembled databases allow species-specific protein-based stable isotope probing of microbiomes without prior knowledge of the community composition". For more information, see SDRF.sdrf.tsv
HostingRepository	PRIDE
AnnounceDate	2025-09-08
AnnouncementXML	Submission_2025-09-07_16:26:42.808.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Simon Klaes
SpeciesList	scientific name: Bacteria; NCBI TaxID: NCBITaxon:2; scientific name: Candidatus Kuenenia stuttgartiensis; NCBI TaxID: 174633;
ModificationList	iodoacetamide derivatized residue
Instrument	Orbitrap Fusion

Revision	Datetime	Status	ChangeLog Entry
0	2024-10-25 14:55:05	ID requested
⏵ 1	2025-09-07 16:26:43	announced

Klaes S, White C, Alvarez-Cohen L, Adrian L, Ding C, De novo peptide databases enable protein-based stable isotope probing of microbial communities with up to species-level resolution. Environ Microbiome, 20(1):111(2025) [pubmed]

10.1186/s40793-025-00767-6;

submitter keyword: de novo peptide sequencing, protein-based stable isotope probing

Lorenz Adrian
contact affiliation	Molecular Environmental Biotechnology, UFZ, Leipzig, Germany
contact email	lorenz.adrian@ufz.de
lab head
Simon Klaes
contact affiliation	Helmholtz Centre for Environmental Research - UFZ
contact email	simon.klaes@ufz.de
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/09/PXD057215

PRIDE project URI

• PRIDE
  1. PXD057215
     1. Label: PRIDE project
     2. Name: De novo assembled databases allow species-specific protein-based stable isotope probing of microbiomes without prior knowledge of the community composition