PXD057121-1

PXD057121 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Transcriptome and Redox Proteome Reveal Temporal Scales of Carbon Metabolism Regulation in Model Cyanobacteria Under Light Disturbance
Description	The purpose of this experiment was to evaluate and understand the regulatory dynamics of carbon fixation in S. elongatus PCC 7942 cscB/SPS under light and dark treatment conditions using a tandem mass tag (TMT) and global mass spectrometry approach. TMT16 and global proteomic data were acquired using a Q-Exactive HF mass spectrometer and processed using MS-GF+ for downstream word cloud analysis of PIML models vs. proteome expression data.
HostingRepository	MassIVE
AnnounceDate	2025-08-01
AnnouncementXML	Submission_2025-08-01_15:26:48.490.xml
DigitalObjectIdentifier
ReviewLevel	Non peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Matthew Monroe
SpeciesList	scientific name: Synechococcus elongatus PCC 7942; NCBI TaxID: 1140;
ModificationList	Oxidation; TMTpro; Carbamidomethyl; Nethylmaleimide
Instrument	Q Exactive Plus; Q Exactive HF

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2024-10-23 16:57:33	ID requested
⏵ 1	2025-08-01 15:26:48	announced

Publication List

no publication

no publication

Keyword List

submitter keyword: physics-informed machine learning, perturbative biology, post-translational modification, cysteine oxidation, systems modeling, DatasetType:Proteomics

submitter keyword: physics-informed machine learning, perturbative biology, post-translational modification, cysteine oxidation, systems modeling, DatasetType:Proteomics

Contact List

Song Feng
contact affiliation	Pacific Northwest National Laboratory
contact email	song.feng@pnnl.gov
lab head
Margaret S. Cheung
contact affiliation	Pacific Northwest National Laboratory
contact email	margaret.cheung-wyker@pnnl.gov
lab head
Matthew Monroe
contact affiliation	Pacific Northwest National Laboratory
contact email	matthew.monroe@pnnl.gov
dataset submitter

Full Dataset Link List

MassIVE dataset URI
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive-ftp.ucsd.edu/v07/MSV000096184/

MassIVE dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive-ftp.ucsd.edu/v07/MSV000096184/