PXD056517-1

PXD056517 is an original dataset announced via ProteomeXchange.

Title	Anaerobic synthetic microbial communities
Description	Anaerobic microbial communities play a critical role in biogeochemical cycles through complex networks of interactions that influence community structure, stability, and functionality. This study investigates the metabolic interactions within synthetic communities composed of a cellulolytic bacterium (Ruminiclostridium cellulolyticum), a hydrogenotrophic methanogen (Methanospirillum hungatei), an acetoclastic methanogen (Methanosaeta concilii), and a sulfate-reducing bacterium (Desulfovibrio vulgaris). Through proteogenomic analysis and metabolic modeling, we quantified the metabolic interaction potential and metabolic resource overlap across bi-, tri-, and quad-cultures.
HostingRepository	PRIDE
AnnounceDate	2025-09-22
AnnouncementXML	Submission_2025-09-21_17:15:35.990.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Dongyu Wang
SpeciesList	scientific name: Methanospirillum hungatei JF-1; NCBI TaxID: 323259; scientific name: Desulfovibrio vulgaris str. Hildenborough; NCBI TaxID: 882; scientific name: Methanothrix soehngenii GP6; NCBI TaxID: 990316; scientific name: Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10); NCBI TaxID: 394503;
ModificationList	No PTMs are included in the dataset
Instrument	Orbitrap Fusion Lumos

Revision	Datetime	Status	ChangeLog Entry
0	2024-10-04 15:54:45	ID requested
⏵ 1	2025-09-21 17:15:36	announced

10.1093/ismeco/ycaf142;

Wang D, Hunt KA, Abrahamson B, Flinkstrom Z, Tao X, Tanner RS, DeLe, ό, n KB, Zhou A, Zhou J, McInerney MJ, Winkler MH, Stahl DA, Candry P, Pan C, Higher-order microbial interactions revealed by comparative metabolic modeling of synthetic communities with varying species composition. ISME Commun, 5(1):ycaf142(2025) [pubmed]

submitter keyword: sulfate-reducing bacteria,Cellulose degrader, methanogen

Chongle Pan
contact affiliation	University of Oklahoma, Norman, OK, USA
contact email	cpan@ou.edu
lab head
Dongyu Wang
contact affiliation	University of Oklahoma
contact email	dywang@ou.edu
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/09/PXD056517

PRIDE project URI

• PRIDE
  1. PXD056517
     1. Label: PRIDE project
     2. Name: Anaerobic synthetic microbial communities