PXD055600 is an
original dataset announced via ProteomeXchange.
Dataset Summary
| Title | Serum N-glycopeptidomics of oral squamous cell carcinoma patients and healthy controls: N-glycopeptidomics |
| Description | The serum N-glycopeptidomics of 41 oral squamous cell carcinoma patients and 44 healthy controls were compared in this project. This project is the second part of a two-part project, where proteomics and N-glycopeptidomics were analyzed in-parallel. The quantitation of N-glycopeptides was performed with MSE in sensitivity mode and the identification with MS2 Fast DDA. |
| HostingRepository | PRIDE |
| AnnounceDate | 2026-02-09 |
| AnnouncementXML | Submission_2026-02-09_08:58:22.995.xml |
| DigitalObjectIdentifier | |
| ReviewLevel | Peer-reviewed dataset |
| DatasetOrigin | Original dataset |
| RepositorySupport | Unsupported dataset by repository |
| PrimarySubmitter | Sakari Joenväärä |
| SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: NEWT:9606; |
| ModificationList | monohydroxylated residue; iodoacetamide derivatized residue |
| Instrument | Synapt MS |
Dataset History
| Revision | Datetime | Status | ChangeLog Entry |
|---|
| 0 | 2024-09-05 14:10:08 | ID requested | |
| ⏵ 1 | 2026-02-09 08:58:23 | announced | |
Publication List
| Tohmola T, Joenv, ä, ä, r, ä S, Dickinson A, M, ä, kitie A, Sil, é, n S, Disease-specific N-glycopeptides in serum of patients with oral squamous cell carcinoma. Sci Rep, 15(1):32276(2025) [pubmed] |
| 10.1038/s41598-025-17339-w; |
Keyword List
| submitter keyword: mass spectrometry, serum, N-glycosylation, OSCC,human |
Contact List
| Prof. Risto Renkonen |
|---|
| contact affiliation | 1. Transplantation Laboratory, University of Helsinki, Helsinki, Finland. 2. HUS Diagnostic Center, Helsinki University Hospital, Helsinki, Finland |
| contact email | risto.renkonen@helsinki.fi |
| lab head | |
| Sakari Joenväärä |
|---|
| contact affiliation | Helsinki University |
| contact email | sakari.joenvaara@helsinki.fi |
| dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2026/02/PXD055600 |
| PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD055600
- Label: PRIDE project
- Name: Serum N-glycopeptidomics of oral squamous cell carcinoma patients and healthy controls: N-glycopeptidomics
