PXD055202-1

PXD055202 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Determining changes in the immunopeptidome of HCT116 cells after treamtent with hypoxia
Description	To determine if the changes in MHC I expression under hyppoxia results in a change in the antigen presentation, we used LC-MS technology to analyze the immunopeptidome. HCT116 cells were treated either in normoxia (21% O2) or hypoxia for 24 hours cells were then collected and a quantitative analysis of the immunopeptidome was performed
HostingRepository	PRIDE
AnnounceDate	2024-10-31
AnnouncementXML	Submission_2024-10-31_07:26:15.280.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD055202
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Nicola Ternette
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	No PTMs are included in the dataset
Instrument	Q Exactive

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2024-08-26 06:26:40	ID requested
⏵ 1	2024-10-31 07:26:15	announced

Publication List

10.6019/PXD055202;

10.6019/PXD055202;

Keyword List

ProteomeXchange project tag: Human Immuno-Peptidome Project (HUPO-HIPP) (B/D-HPP), Biology/Disease-Driven Human Proteome Project (B/D-HPP), Human Proteome Project
submitter keyword: HCT116,Hypoxia, immunopeptidomics

ProteomeXchange project tag: Human Immuno-Peptidome Project (HUPO-HIPP) (B/D-HPP), Biology/Disease-Driven Human Proteome Project (B/D-HPP), Human Proteome Project

submitter keyword: HCT116,Hypoxia, immunopeptidomics

Contact List

Nicola Ternette
contact affiliation	University of Oxford
contact email	nicola.ternette@ndm.ox.ac.uk
lab head
Nicola Ternette
contact affiliation	University of Oxford
contact email	nicola.ternette@ndm.ox.ac.uk
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/10/PXD055202
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/10/PXD055202

PRIDE project URI

Repository Record List

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