PXD055174-1

PXD055174 is an original dataset announced via ProteomeXchange.

Title	Exploring the Biological Mechanisms of Severe COVID-19 in the Elderly: Insights from an Aged Mouse
Description	Coronavirus disease 2019 (COVID-19), caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), has resulted in a global health crisis, particularly affecting the elderly, who are more susceptible to severe outcomes. However, definitive parameters or mechanisms underlying the severity of COVID-19 in elderly people remain confused. Thus, this study seeks to elucidate the mechanism behind the increased vulnerability of elderly individuals to severe COVID-19. We employed an aged mouse model with a mouse-adapted SARS-CoV-2 strain to mimic the severe symptoms observed in elderly patients with COVID-19. Comprehensive analyses of the whole lung were performed using transcriptome and proteome sequencing, comparing data from aged and young mice. For transcriptome analysis, bulk RNA sequencing was conducted using an Illumina sequencing platform. Proteomic analysis was performed using mass spectrometry following protein extraction, digestion, and peptide labeling. We analyzed the transcriptome and proteome profiles of young and aged mice and discovered that aged mice exhibited elevated baseline levels of inflammation and tissue damage repair. After SARS-CoV-2 infection, aged mice showed increased antiviral and inflammatory responses; however, these responses were weaker than those in young mice, with significant complement and coagulation cascade responses. In summary, our study demonstrates that the increased vulnerability of the elderly to severe COVID-19 can be attributed to an attenuated antiviral response and the overactivation of complement and coagulation cascades.
HostingRepository	PRIDE
AnnounceDate	2024-09-27
AnnouncementXML	Submission_2024-09-27_04:10:12.842.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Xian Lin
SpeciesList	scientific name: Mus musculus (Mouse); NCBI TaxID: 10090;
ModificationList	TMT6plex-126 reporter+balance reagent acylated residue
Instrument	LTQ

Revision	Datetime	Status	ChangeLog Entry
0	2024-08-25 02:31:55	ID requested
⏵ 1	2024-09-27 04:10:13	announced
2	2024-10-22 06:59:51	announced	2024-10-22: Updated project metadata.

Dataset with its publication pending

submitter keyword: transcriptome,SARS-CoV-2, complement activation, immune response, aged mice, proteome

quanjiao, Chen
contact affiliation	CAS Key Laboratory of Special Pathogens and Biosafety, Center for Biosafety Mega-Science, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan, 430071, China.
contact email	chenqj@wh.iov.cn
lab head
Xian Lin
contact affiliation	wuhan institute of virology
contact email	linxian@wh.iov.cn
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/09/PXD055174

PRIDE project URI

• PRIDE
  1. PXD055174
     1. Label: PRIDE project
     2. Name: Exploring the Biological Mechanisms of Severe COVID-19 in the Elderly: Insights from an Aged Mouse