PXD054646-1

PXD054646 is an original dataset announced via ProteomeXchange.

Title	Deciphering the logic of mammalian mitochondrially-localised translation
Description	Localised translation broadly enables spatiotemporal control of gene expression yet currently there are limited tools for monitoring subcellular translation in mammalian cells. Here we present LOCL-TL (LOV-domain Controlled Ligase for Translation Localisation) an optogenetic approach for labelling ribosomes at any defined subcellular location and quantitatively determining their translation with codon precision through ribosome profiling. Application of LOCL-TL to mitochondrially localised translation revealed that ~20% of human nuclear-encoded mitochondrial genes are robustly translated on the outer mitochondrial membrane (OMM). Mitochondrially-translated messages form two classes distinguished by the length of proteins they encode, and the mechanism, and function of their recruitment. An evolutionarily ancient mechanism allows nascent chains to drive the cotranslational recruitment of long proteins via a bipartite targeting signal, which acts on mostly mitochondrial matrix proteins of bacterial origin. Conversely, mRNAs of short proteins, especially eukaryotic origin electron transport chain (ETC) components, are directly recruited to the OMM, in a manner that depends on the 3’UTR, mRNA splicing and the OMM protein A-Kinase Anchoring Protein 1 (AKAP1) and disruption of localised translation through the loss of AKAP1 lowers ETC production. Our studies thus reveal a hierarchical strategy used to enable preferential translation of a subset of proteins on the OMM.
HostingRepository	PRIDE
AnnounceDate	2025-07-29
AnnouncementXML	Submission_2025-07-29_14:47:32.604.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Kelsey Hickey
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Orbitrap Eclipse

Revision	Datetime	Status	ChangeLog Entry
0	2024-08-06 10:10:53	ID requested
⏵ 1	2025-07-29 14:47:32	announced

Dataset with its publication pending

submitter keyword: Human, Mitochondria, Localised Translation

J. Wade Harper
contact affiliation	Cell Biology, Harvard Medical School
contact email	wade.harper@hms.harvard.edu
lab head
Kelsey Hickey
contact affiliation	HMS
contact email	kelsey_hickey@hms.harvard.edu
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/07/PXD054646

PRIDE project URI

• PRIDE
  1. PXD054646
     1. Label: PRIDE project
     2. Name: Deciphering the logic of mammalian mitochondrially-localised translation