PXD054412 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | A male Denisovan mandible from Pleistocene Taiwan |
Description | Denisovans are an extinct hominin group defined by ancient genomes of Middle to Late Pleistocene fossils from southern Siberia. Although genomic evidence suggests their widespread distribution throughout eastern Asia and possibly Oceania, so far only a few fossils from the Altai and Tibet are confidently identified molecularly as Denisovan. We identified a hominin mandible (Penghu 1) from Taiwan (10,000 to 70,000 years ago or 130,000 to 190,000 years ago) as belonging to a male Denisovan by applying ancient protein analysis. We retrieved 4241 amino acid residues and identified two Denisovan-specific variants. The increased fossil sample of Denisovans demonstrates their wider distribution, including warm and humid regions, as well as their shared distinct robust dentognathic traits that markedly contrast with their sister group, Neanderthals. |
HostingRepository | PRIDE |
AnnounceDate | 2025-04-09 |
AnnouncementXML | Submission_2025-04-08_21:13:02.324.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Takumi Tsutaya |
SpeciesList | scientific name: Palaeoloxodon sp.; NCBI TaxID: 3064006; scientific name: Suidae; NCBI TaxID: 9821; scientific name: Homininae; NCBI TaxID: 207598; |
ModificationList | 4-hydroxy-L-proline; monohydroxylated residue; deamidated residue; iodoacetamide derivatized residue |
Instrument | Orbitrap Exploris 480 |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2024-07-30 16:47:55 | ID requested | |
⏵ 1 | 2025-04-08 21:13:02 | announced | |
Publication List
Keyword List
submitter keyword: enamel, dentin, bone, Penghu,palaeoproteomics, Denisovan, Taiwan, LC-MS/MS |
Contact List
Frido Welker |
contact affiliation | Globe Institute, University of Copenhagen |
contact email | frido.welker@sund.ku.dk |
lab head | |
Takumi Tsutaya |
contact affiliation | The Graduate University for Advanced Studies |
contact email | tsuta16@gmail.com |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/04/PXD054412 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD054412
- Label: PRIDE project
- Name: A male Denisovan mandible from Pleistocene Taiwan