PXD054133-1

PXD054133 is an original dataset announced via ProteomeXchange.

Title	4D-DIA Proteomics Uncovers New Insights into Host Salivary Response Following SARS-CoV-2 Omicron Infection
Description	We applied a 4D dia-PASEF proteomic approach to investigate the salivary protein profile of individuals with early-to-acute SARS-CoV-2 Omicron infection. We combined proteomics and functional analyses with feature selection and ROC multivariate analysis to identify and assess salivary proteins for COVID-19 screening.
HostingRepository	PRIDE
AnnounceDate	2025-01-18
AnnouncementXML	Submission_2025-01-17_18:38:15.416.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Iasmim Lima
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	acetylated residue; monohydroxylated residue; iodoacetamide derivatized residue
Instrument	timsTOF Pro

Revision	Datetime	Status	ChangeLog Entry
0	2024-07-22 21:45:21	ID requested
⏵ 1	2025-01-17 18:38:16	announced

10.1021/acs.jproteome.4c00630;

de Lima IL, Cataldi TR, Brites C, Labate MTV, Vaz SN, Deminco F, da Cunha GS, Labate CA, Eberlin MN, 4D-DIA Proteomics Uncovers New Insights into Host Salivary Response Following SARS-CoV-2 Omicron Infection. J Proteome Res, 24(2):499-514(2025) [pubmed]

submitter keyword: proteomics, dia-PASEF, mass-spectrometry, saliva, SARS-CoV-2,Omicron, COVID-19

Marcos Nogueira
contact affiliation	PPGEMN, School of Engineering, Mackenzie Presbyterian University & MackGraphe - Mackenzie Institute for Research in Graphene and Nanotechnologies, Mackenzie Presbyterian Institute, São Paulo – SP, 01302-907, Brazil
contact email	marcos.eberlin@mackenzie.br
lab head
Iasmim Lima
contact affiliation	Presbyterian Mackenzie University
contact email	iasmim.lima@mackenzista.com.br
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/01/PXD054133

PRIDE project URI

• PRIDE
  1. PXD054133
     1. Label: PRIDE project
     2. Name: 4D-DIA Proteomics Uncovers New Insights into Host Salivary Response Following SARS-CoV-2 Omicron Infection