PXD053700-1

PXD053700 is an original dataset announced via ProteomeXchange.

Title	Predicting the Protein Corona on Nanoparticles Using Random Forest Models with Nanoparticle, Protein, and Experimental Features
Description	We describe the predicted composition and abundance of the protein corona as a function of protein, nanoparticle, and experimental features that serve as the input dataset in which our Random Forest Regression (RFR) and Random Forest Classifier (RFC) models were trained on. Predictions were made using a supervised learning model, which was evaluated on an unseen test split of the data.
HostingRepository	PRIDE
AnnounceDate	2025-08-04
AnnouncementXML	Submission_2025-08-04_09:33:15.662.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD053700
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Nicole Vijgen
SpeciesList	scientific name: Bos taurus (Bovine); NCBI TaxID: 9913;
ModificationList	iodoacetamide derivatized residue
Instrument	Orbitrap Fusion Lumos

Revision	Datetime	Status	ChangeLog Entry
0	2024-07-05 08:59:41	ID requested
⏵ 1	2025-08-04 09:33:16	announced

10.6019/PXD053700;

10.1039/D5NA00425J;

submitter keyword: Random Forest Classifier, Random Forest Regression, Fetal Bovine Serum, Nanoparticles,Machine Learning, Protein Corona, LC-MS/MS

Christine K.
contact affiliation	Duke University, Mechanical Engineering and Materials Science
contact email	christine.payne@duke.edu
lab head
Nicole Vijgen
contact affiliation	Duke University
contact email	nicole.vijgen@duke.edu
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/08/PXD053700

PRIDE project URI

• PRIDE
  1. PXD053700
     1. Label: PRIDE project
     2. Name: Predicting the Protein Corona on Nanoparticles Using Random Forest Models with Nanoparticle, Protein, and Experimental Features