PXD053222-1
PXD053222 is an original dataset announced via ProteomeXchange.
Dataset Summary
| Title | DIA-based deep proteome and phosphoproteome profiling of early cold response in tomato fruits |
| Description | Low temperature storage, a widely used technique for extending shelf life of tomato (Solanum lycopersicum) fruits, also induces chilling injury and results in fruit quality loss and consumer dissatisfaction. Numerous studies have been performed to dissect the molecular mechanisms of the cold tolerance of tomato fruits, mainly with long-time cold treatments. However, the early signal events of cold response in fruits are largely unknown. In this study, we construct mass spectral libraries of proteome (corresponding to over 11,000 proteins) and phosphoproteome (corresponding to over 24,000 high-confidence phosphosites) of tomato fruits, and then perform data-independent acquisition (DIA) based comprehensive proteome and phosphoproteome profiling of tomato fruits at red-ripe stage upon cold treatment of 30 minutes. |
| HostingRepository | iProX |
| AnnounceDate | 2024-06-18 |
| AnnouncementXML | Submission_2024-12-12_19:07:39.897.xml |
| DigitalObjectIdentifier | |
| ReviewLevel | Peer-reviewed dataset |
| DatasetOrigin | Original dataset |
| RepositorySupport | Unsupported dataset by repository |
| PrimarySubmitter | Zhiping Deng |
| SpeciesList | scientific name: Solanum lycopersicum; NCBI TaxID: 4081; |
| ModificationList | No PTMs are included in the dataset |
| Instrument | Q Exactive HF |
Dataset History
| Revision | Datetime | Status | ChangeLog Entry |
|---|---|---|---|
| 0 | 2024-06-18 22:03:10 | ID requested | |
| ⏵ 1 | 2024-12-12 19:07:40 | announced | |
| 2 | 2024-12-12 19:08:02 | announced | 2024-12-13: Update information. |
Publication List
| Xing J, Tan J, Feng H, Zhou Z, Deng M, Luo H, Deng Z, Integrative Proteome and Phosphoproteome Profiling of Early Cold Response in Maize Seedlings. Int J Mol Sci, 23(12):(2022) [pubmed] |
Keyword List
| submitter keyword: Tomato, fruit, Cold, Phosphoproteome, Data-independent acquisition |
Contact List
| Zhiping Deng | |
|---|---|
| contact affiliation | Zhejiang Academy of Agricultural Sciences |
| contact email | zhipingdeng@126.com |
| lab head | |
| Zhiping Deng | |
| contact affiliation | Zhejiang Academy of Agricultural Sciences |
| contact email | zhipingdeng@126.com |
| dataset submitter | |
Full Dataset Link List
| iProX dataset URI |
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