PXD053198-1

PXD053198 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Trinucleotide cap analogs with tetraphosphate modifications: interaction partners in HEK293F cell lysate
Description	This dataset was acquired to identify human proteins binding to tetraphosphate mRNA cap analogs. Affinity resins were derivatized with tetraphosphate mRNA cap analogs or a trinucleotide cap control and affinity purification performed in HEK293F cell extracts. The pulled-down proteins were eluted using soluble cap analogs, subjected to digestion with trypsin, TMT labelling, and nLC-MS/MS analysis.
HostingRepository	PRIDE
AnnounceDate	2024-10-02
AnnouncementXML	Submission_2024-10-02_04:14:15.053.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Remigiusz Serwa
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	acetylated residue; monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive HF-X

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2024-06-18 05:20:35	ID requested
⏵ 1	2024-10-02 04:14:15	announced
2	2024-10-22 07:00:24	announced	2024-10-22: Updated project metadata.

Publication List

10.1093/NAR/GKAE763;

10.1093/NAR/GKAE763;

Keyword List

submitter keyword: tetraphosphate, affinity purification, HEK293F, 5′ cap,mRNA

submitter keyword: tetraphosphate, affinity purification, HEK293F, 5′ cap,mRNA

Contact List

Jacek Jemielity
contact affiliation	Centre of New Technologies, University of Warsaw, Banacha 2C, 02-097 Warsaw, Poland
contact email	j.jemielity@cent.uw.edu.pl
lab head
Remigiusz Serwa
contact affiliation	The International Institute of Molecular Mechanisms and Machines, Polish Academy of Sciences
contact email	r.serwa@imol.edu.pl
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/10/PXD053198
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/10/PXD053198

PRIDE project URI

Repository Record List

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