PXD053196-1

PXD053196 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	ProtGraph re-analysis of HCC dataset
Description	This is a re-analysis of the dataset deposited in PXD002171 (DOI: 10.1021/acs.jproteome.5b00420, PubMed: 26626371) with databases created by ProtGraph. We only changed the data processing, the sample creation and processing is the same as in the original submission. ProtGraph allows to incorporate variant and further feature information, which changes the amino acid composition of consensus/canonical sequences in a database and is commonly not used in the database analysis.
HostingRepository	PRIDE
AnnounceDate	2025-01-17
AnnouncementXML	Submission_2025-01-17_01:31:12.265.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD053196
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Julian Uszkoreit
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	LTQ Orbitrap Elite

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2024-06-18 03:08:20	ID requested
⏵ 1	2025-01-17 01:31:12	announced

Publication List

10.6019/PXD053196;
10.1093/BIB/BBAE671;

10.6019/PXD053196;

10.1093/BIB/BBAE671;

Keyword List

submitter keyword: reanalysis, hcc, variants,human

submitter keyword: reanalysis, hcc, variants,human

Contact List

Julian Uszkoreit
contact affiliation	Ruhr University Bochum, Medical Faculty, Medical Bioinformatics
contact email	julian.uszkoreit@rub.de
lab head
Julian Uszkoreit
contact affiliation	Ruhr University Bochum, Medical Faculty, Medical Bioinformatics
contact email	julian.uszkoreit@rub.de
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/01/PXD053196
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/01/PXD053196

PRIDE project URI

Repository Record List

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