PXD053005 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Modulation of biological activities in adipose derived stem cells by histone deacetylation |
Description | Epigenetic pharmaceuticals hold the promise of using cell-based regeneration to revolutionize wound healing treatment. Histone acetylation and deacetylation conducts an intriguing way that influences the fate of stem cells. In this context, we used pharmacological manipulation to coordinate histone acetylation in stem cells. When HDACs expression reduced or silenced using HDAC inhibitors, such as Suberoylanilide hydroxamic acid (SAHA), a spectacular transformation occurred at the cellular and the molecular levels. In our study, we used adipose-derived stem cells which received consecutive SAHA treatment for 72 hours. No change in the cell viability could be noticed at the studied concentrations. On the other hand, a decrease in the protein expression of histone deacetylases at 1000 nM was found. The cell proliferation marker (Ki-67) was increased after SAHA treatment compared to the vehicle as shown by immunofluorescence staining. The expression of CCND1 gene expression was upregulated, while the protein expression of the proliferating cell nuclear antigen was downregulated. Alternatively, microarray analysis revealed that CDKN1A and MDM2 genes were upregulated under the influence of SAHA. On the other hand, the mass spectrometry pathway enrichment analysis showed that cell cycle, ATP-dependent chromatin remodeling and DNA are among the regulated pathways. This study suggested that SAHA as pharmaco-epigenetic agent might alter ADSCs determination through coordinated biological processes. |
HostingRepository | PRIDE |
AnnounceDate | 2025-05-07 |
AnnouncementXML | Submission_2025-05-06_19:10:16.161.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Sallam Abdallah |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | acetylated residue |
Instrument | timsTOF Pro |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2024-06-11 05:08:51 | ID requested | |
⏵ 1 | 2025-05-06 19:10:17 | announced | |
Publication List
10.1038/s41598-024-84652-1; |
Abdallah S, Tabebi M, Qanadilo S, Ali N, Wang J, D'Arcy P, Zhong W, Sjoberg F, Elmasry M, El-Serafi A, Modulation of biological activities in adipose derived stem cells by histone deacetylation. Sci Rep, 15(1):3629(2025) [pubmed] |
Keyword List
submitter keyword: Histone deacetylase inhibitor, Suberoylanilide hydroxamic acid, differentiation, adipose derived stem cells, epigenetic, epigenetic modifier, Vorinostat |
Contact List
Sallam A bdallah |
contact affiliation | PhD student, Linköping University |
contact email | sallam.abdallah@liu.se |
lab head | |
Sallam Abdallah |
contact affiliation | BKV linköping University |
contact email | sallam.abdallah@liu.se |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/05/PXD053005 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD053005
- Label: PRIDE project
- Name: Modulation of biological activities in adipose derived stem cells by histone deacetylation