PXD051787-1

PXD051787 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	p53-inducible lncRNA LOC644656 causes genotoxic stress-induced stem cell maldifferentiation and cancer chemoresistance
Description	Biotin-labeled LOC644656 sense-, antisense-conjugated avidin magnet beads or empty magnet beads (Mock) were used for RNA pull-down using whole cell lysates of human embryonic stem cells. LOC644656 complexes were pulled-down and then separated by SDS‒PAGE. Bands were removed from the gel, and trypsin-digested samples were subjected to liquid chromatography-tandem mass spectrometry (LC-MS/MS) using an Orbitrap Velos Pro (Thermo Scientific). MS/MS dataset analysis was performed using the Mascot software program (Matrix Science).
HostingRepository	jPOST
AnnounceDate	2025-04-27
AnnouncementXML	Submission_2025-04-26_08:00:09.329.xml
DigitalObjectIdentifier
ReviewLevel	Non peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Yusuke Kawashima
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	S-carboxamidomethyl-L-cysteine; L-methionine sulfoxide
Instrument	LTQ Orbitrap Velos Pro

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2024-04-26 19:44:47	ID requested
⏵ 1	2025-04-26 08:00:09	announced

Publication List

Dataset with its publication pending

Dataset with its publication pending

Keyword List

submitter keyword: long non-coding RNA, LOC644656, p53, genotoxic stress, maldifferentiation, cancer chemoresistance, human embryonic stem cells, POU5F1, TGF-β, DNA-PKcs

submitter keyword: long non-coding RNA, LOC644656, p53, genotoxic stress, maldifferentiation, cancer chemoresistance, human embryonic stem cells, POU5F1, TGF-β, DNA-PKcs

Contact List

Tomoaki Tanaka
lab head
Yusuke Kawashima
contact affiliation	Kazusa DNA Research Institute
dataset submitter

Full Dataset Link List

jPOST dataset URI
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jPOST dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.jpostdb.org/JPST003060/