PXD051002 is an
original dataset announced via ProteomeXchange.
Dataset Summary
| Title | Evaluation of the technical reproducibility of serum proteome sample preparation methods to support clinical proteomics applications |
| Description | Evaluation of the efficiency and reproducibility of sample prepration methods using iST-BCT kit from PreOmics or SMART Trypsin Kit (Thermo Fisher) with in-house Rapigest protocol in human serum samples prior to mass spectrometry analysis. |
| HostingRepository | PRIDE |
| AnnounceDate | 2025-04-07 |
| AnnouncementXML | Submission_2025-04-07_09:54:12.116.xml |
| DigitalObjectIdentifier | |
| ReviewLevel | Peer-reviewed dataset |
| DatasetOrigin | Original dataset |
| RepositorySupport | Unsupported dataset by repository |
| PrimarySubmitter | Jesenia Perez |
| SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
| ModificationList | monohydroxylated residue; iodoacetamide derivatized residue |
| Instrument | Q Exactive Plus |
Dataset History
| Revision | Datetime | Status | ChangeLog Entry |
|---|
| 0 | 2024-03-26 19:30:31 | ID requested | |
| ⏵ 1 | 2025-04-07 09:54:12 | announced | |
Publication List
| Twigg CAI, Perez JM, Ryu J, Hanson BK, Barrera Estrada VJ, Thomas SN, Evaluation of Serum Proteome Sample Preparation Methods to Support Clinical Proteomics Applications. J Am Soc Mass Spectrom, 35(11):2659-2669(2024) [pubmed] |
| 10.1021/jasms.4c00131; |
Keyword List
| submitter keyword: serum |
| proteomics |
| biomarker |
| mass spectrometry |
| RapiGest SF |
| iST-BCT |
| SMART Digest Trypsin |
Contact List
| Stefani N. Thomas |
|---|
| contact affiliation | Department of Laboratory Medicine and Pathology, University of Minnesota School of Medicine, USA |
| contact email | stefanit@umn.edu |
| lab head | |
| Jesenia Perez |
|---|
| contact affiliation | University of Minnesota |
| contact email | perez888@umn.edu |
| dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/04/PXD051002 |
| PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD051002
- Label: PRIDE project
- Name: Evaluation of the technical reproducibility of serum proteome sample preparation methods to support clinical proteomics applications
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