PXD051002

PXD051002 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Evaluation of the technical reproducibility of serum proteome sample preparation methods to support clinical proteomics applications
Description	Evaluation of the efficiency and reproducibility of sample prepration methods using iST-BCT kit from PreOmics or SMART Trypsin Kit (Thermo Fisher) with in-house Rapigest protocol in human serum samples prior to mass spectrometry analysis.
HostingRepository	PRIDE
AnnounceDate	2025-04-07
AnnouncementXML	Submission_2025-04-07_09:54:12.116.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Jesenia Perez
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive Plus

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2024-03-26 19:30:31	ID requested
⏵ 1	2025-04-07 09:54:12	announced

Publication List

Twigg CAI, Perez JM, Ryu J, Hanson BK, Barrera Estrada VJ, Thomas SN, Evaluation of Serum Proteome Sample Preparation Methods to Support Clinical Proteomics Applications. J Am Soc Mass Spectrom, 35(11):2659-2669(2024) [pubmed]
10.1021/jasms.4c00131;

Twigg CAI, Perez JM, Ryu J, Hanson BK, Barrera Estrada VJ, Thomas SN, Evaluation of Serum Proteome Sample Preparation Methods to Support Clinical Proteomics Applications. J Am Soc Mass Spectrom, 35(11):2659-2669(2024) [pubmed]

10.1021/jasms.4c00131;

Keyword List

submitter keyword: serum
proteomics
biomarker
mass spectrometry
RapiGest SF
iST-BCT
SMART Digest Trypsin

submitter keyword: serum

proteomics

biomarker

mass spectrometry

RapiGest SF

iST-BCT

SMART Digest Trypsin

Contact List

Stefani N. Thomas
contact affiliation	Department of Laboratory Medicine and Pathology, University of Minnesota School of Medicine, USA
contact email	stefanit@umn.edu
lab head
Jesenia Perez
contact affiliation	University of Minnesota
contact email	perez888@umn.edu
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/04/PXD051002
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/04/PXD051002

PRIDE project URI

Repository Record List

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