PXD050353-1

PXD050353 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Untargeted virus identification in fecal samples from publicly available proteomes
Description	A novel proteotyping-based method that permits an untargeted approach for the identification of pathogenic viruses and other components, from public proteomes aquired from faeces samples.
HostingRepository	PRIDE
AnnounceDate	2024-11-06
AnnouncementXML	Submission_2024-11-06_01:52:14.729.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD050353
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Jean ARMENGAUD
SpeciesList	scientific name: Faecalibacterium prausnitzii; NCBI TaxID: 853; scientific name: Blastocystis hominis; NCBI TaxID: 12968; scientific name: Faecalicatena fissicatena; NCBI TaxID: 290055; scientific name: Norwalk-like virus; NCBI TaxID: 95340; scientific name: Bacteroides fragilis; NCBI TaxID: 817; scientific name: Phocaeicola massiliensis; NCBI TaxID: 204516; scientific name: Rotavirus A human/Vanderbilt/VU08-09-24/2008/G3P[8]; NCBI TaxID: 1004879; scientific name: Segatella copri; NCBI TaxID: 165179;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2024-03-05 00:54:19	ID requested
⏵ 1	2024-11-06 01:52:15	announced

Publication List

Lozano C, Pible O, Eschlimann M, Giraud M, Debroas S, Gaillard JC, Bellanger L, Taysse L, Armengaud J, Universal Identification of Pathogenic Viruses by Liquid Chromatography Coupled with Tandem Mass Spectrometry Proteotyping. Mol Cell Proteomics, 23(10):100822(2024) [pubmed]
10.6019/PXD050353;
10.1016/j.mcpro.2024.100822;

Lozano C, Pible O, Eschlimann M, Giraud M, Debroas S, Gaillard JC, Bellanger L, Taysse L, Armengaud J, Universal Identification of Pathogenic Viruses by Liquid Chromatography Coupled with Tandem Mass Spectrometry Proteotyping. Mol Cell Proteomics, 23(10):100822(2024) [pubmed]

10.6019/PXD050353;

10.1016/j.mcpro.2024.100822;

Keyword List

submitter keyword: Virus, proteomics, diagnosis, proteotyping

submitter keyword: Virus, proteomics, diagnosis, proteotyping

Contact List

Jean Armengaud
contact affiliation	Li2D
contact email	jean.armengaud@cea.fr
lab head
Jean ARMENGAUD
contact affiliation	Li2D
contact email	jean.armengaud@cea.fr
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/11/PXD050353
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/11/PXD050353

PRIDE project URI

Repository Record List

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