PXD050301 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Comparative proteomics analysis of root and nodule mitochondria of soybean |
Description | Legumes perform symbiotic nitrogen fixation through rhizobial bacteroids housed in specialised root nodules. The biochemical process is energy‐intensive and consumes a huge carbon source to generate sufficient reducing power. To maintain the symbiosis, malate is supplied by legume nodules to bacteroids as their major carbon and energy source in return for ammonium ions and nitrogenous compounds. To sustain the carbon supply to bacteroids, nodule cells undergo drastic reorganisation of carbon metabolism. Here, a comprehensive quantitative comparison of the mitochondrial proteomes between root nodules and uninoculated roots was performed using data‐independent acquisition proteomics, revealing the modulations in nodule mitochondrial proteins and pathways in response to carbon reallocation. Corroborated our findings with that from the literature, we believe nodules preferably allocate cytosolic phosphoenolpyruvates towards malate synthesis in lieu of pyruvate synthesis, and nodule mitochondria prefer malate over pyruvate as the primary source of NADH for ATP production. Moreover, the differential regulation of respiratory chain‐associated proteins suggests that nodule mitochondria could enhance the efficiencies of complexes I and IV for ATP synthesis. This study highlighted a quantitative proteomic view of the mitochondrial adaptation in soybean nodules. |
HostingRepository | PRIDE |
AnnounceDate | 2024-07-16 |
AnnouncementXML | Submission_2024-07-15_19:56:40.189.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Wai Ching SIN |
SpeciesList | scientific name: Glycine max; NCBI TaxID: 3847; |
ModificationList | monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | Orbitrap Exploris 480 |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2024-03-03 21:57:36 | ID requested | |
⏵ 1 | 2024-07-15 19:56:40 | announced | |
2 | 2024-10-22 06:50:02 | announced | 2024-10-22: Updated project metadata. |
Publication List
Keyword List
submitter keyword: nitrogen fixation,Data-independent acquisition (DIA) proteomics, electron transport chain, Glycine max, mitochondria, malate, nodule, legume, soybean |
Contact List
Boon Leong Lim |
contact affiliation | School of Biological Sciences, University of Hong Kong; Pokfulam, Hong Kong, China |
contact email | bllim@hku.hk |
lab head | |
Wai Ching SIN |
contact affiliation | School of Life Sciences, The Chinese University of Hong Kong |
contact email | waichingsin@cuhk.edu.hk |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD050301
- Label: PRIDE project
- Name: Comparative proteomics analysis of root and nodule mitochondria of soybean