PXD049079 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | The microbiome of the lichen Lobaria pulmonaria varies according to climate in Europe |
Description | The Lobaria pulmonaria holobiont consists of algal, fungal, cyanobacterial, and integrated diverse bacterial components and thrives in undisturbed, humid forests. We set out to investigate the role of the microbiome of L. pulmonaria in the adaptation of this ecologically sensitive lichen species to diverse climatic conditions. Our central hypothesis posited that microbiome composition and functionality aligns with continental-scale climatic parameters related to temperature and precipitation. In addition, we tested whether short-term weather dynamics, sampling season, and the genotypes of the fungal and algal partners influenced the variation in the lichen microbiome. Insights into compositional and functional changes within the microbiome were obtained using metaproteomics. Comparative examinations between Sub-Atlantic Lowland (SAL) and Alpine (ALP) regions unveiled the distinct impact of climate on microbiome functions. |
HostingRepository | PRIDE |
AnnounceDate | 2024-07-03 |
AnnouncementXML | Submission_2024-07-03_04:29:03.417.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Daniela Zuehlke |
SpeciesList | scientific name: Lobaria pulmonaria; NCBI TaxID: 86794; |
ModificationList | monohydroxylated residue |
Instrument | LTQ Orbitrap Elite |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2024-02-01 04:54:49 | ID requested | |
⏵ 1 | 2024-07-03 04:29:04 | announced | |
Publication List
Bogale AT, Braun M, Bernhardt J, Z, ΓΌ, hlke D, Schiefelbein U, Bog M, Scheidegger C, Zengerer V, Becher D, Grube M, Riedel K, Bengtsson MM, The microbiome of the lichen Lobaria pulmonaria varies according to climate on a subcontinental scale. Environ Microbiol Rep, 16(3):e13289(2024) [pubmed] |
10.1111/1758-2229.13289; |
Keyword List
submitter keyword: Symbiosis, genotyping, lung lichen, holobiont, metaproteomics |
Contact List
Kathrin Riedel |
contact affiliation | University of Greifswald, Institute of Microbiology, Department of Microbial Physiology and Molecular Biology |
contact email | riedela@uni-greifswald.de |
lab head | |
Daniela Zuehlke |
contact affiliation | University of Greifswald, Institute of Microbiology |
contact email | zuehlke@uni-greifswald.de |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD049079
- Label: PRIDE project
- Name: The microbiome of the lichen Lobaria pulmonaria varies according to climate in Europe