PXD048538-1

PXD048538 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	LC-MSMS based (phospho)proteomics on gastric cancer cell lines
Description	We exploit a large panel of gastric cancer cell lines and three powerful (phospho)proteomic workflows, including tyrosine phosphorylation profiling, to provide the characterization of the gastric cancer proteome. The resulting datasets are used individually and in an integrated manner to generate novel subclassifications with subtype-specific molecular features.
HostingRepository	PRIDE
AnnounceDate	2024-12-17
AnnouncementXML	Submission_2024-12-16_20:36:55.150.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Changyuan Hu
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	phosphorylated residue
Instrument	Q Exactive HF; Q Exactive

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2024-01-14 22:59:49	ID requested
⏵ 1	2024-12-16 20:36:55	announced

Publication List

Hu C, Song J, Kwok T, Nguyen EV, Shen X, Daly RJ, Proteome-based molecular subtyping and therapeutic target prediction in gastric cancer. Mol Oncol, 18(6):1437-1459(2024) [pubmed]
10.1002/1878-0261.13654;

Hu C, Song J, Kwok T, Nguyen EV, Shen X, Daly RJ, Proteome-based molecular subtyping and therapeutic target prediction in gastric cancer. Mol Oncol, 18(6):1437-1459(2024) [pubmed]

10.1002/1878-0261.13654;

Keyword List

submitter keyword: LC-MSMS, proteomics,gastric cancer, tyrosine phosphorylation profiling, phosphoproteomics

submitter keyword: LC-MSMS, proteomics,gastric cancer, tyrosine phosphorylation profiling, phosphoproteomics

Contact List

Roger Daly
contact affiliation	Biomedicine Discovery Institute, Monash University, Clayton, Australia. Department of Biochemistry and Molecular Biology, Monash University, Clayton, Australia
contact email	roger.daly@monash.edu
lab head
Changyuan Hu
contact affiliation	Monash University
contact email	changyuan.hu@monash.edu
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/12/PXD048538
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/12/PXD048538

PRIDE project URI

Repository Record List

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