PXD048170-1

PXD048170 is an original dataset announced via ProteomeXchange.

Title	Histone serotonylation regulates ependymoma tumorigenesis through neurodevelopmental pathways
Description	Bidirectional communication between tumors and neurons has emerged as a key facet of the tumor microenvironment that drives malignancy. Another hallmark feature of cancer is epigenomic dysregulation, where alterations in gene expression influences cell states and interactions with the tumor microenvironment. Using the pediatric brain tumor ependymoma (EPN) as a model, we found that inhibition of histone serotonylation blocks EPN tumorigenesis and regulates expression of a core set of developmental transcription factors (TFs). High-throughput, in vivo screening of these TFs revealed that ETV5 promotes EPN tumorigenesis and functions by enhancing repressive chromatin states. Neuropeptide Y (NPY) is amongst the genes repressed by ETV5 and its overexpression suppresses EPN tumor progression and tumor-associated network hyperactivity via synaptic remodeling. Collectively, these studies identify histone serotonylation as a key driver of EPN tumorigenesis, while further revealing how neuronal signaling, neuro-epigenomics, and developmental programs are intertwined to drive malignancy in brain cancer.
HostingRepository	PRIDE
AnnounceDate	2024-09-09
AnnouncementXML	Submission_2024-09-09_13:39:05.345.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Antrix Jain
SpeciesList	scientific name: Mus musculus (Mouse); NCBI TaxID: 10090;
ModificationList	No PTMs are included in the dataset
Instrument	Orbitrap Fusion

Revision	Datetime	Status	ChangeLog Entry
0	2023-12-29 07:43:55	ID requested
⏵ 1	2024-09-09 13:39:06	announced
2	2024-09-11 02:22:40	announced	2024-09-11: Updated project metadata.

10.1038/s41586-024-07751-z;

Chen HC, He P, McDonald M, Williamson MR, Varadharajan S, Lozzi B, Woo J, Choi DJ, Sardar D, Huang-Hobbs E, Sun H, Ippagunta SM, Jain A, Rao G, Merchant TE, Ellison DW, Noebels JL, Bertrand KC, Mack SC, Deneen B, Histone serotonylation regulates ependymoma tumorigenesis. Nature, 632(8026):903-910(2024) [pubmed]

submitter keyword: epigenetic regulation,ZFTA-RELA ependymoma, cancer neuroscience, developmental transcription factor

Benjamin Deneen
contact affiliation	Baylor College of Medicine Houston, Texas
contact email	deneen@bcm.edu
lab head
Antrix Jain
contact affiliation	Baylor College of Medicine
contact email	antrixj@bcm.edu
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/09/PXD048170

PRIDE project URI

• PRIDE
  1. PXD048170
     1. Label: PRIDE project
     2. Name: Histone serotonylation regulates ependymoma tumorigenesis through neurodevelopmental pathways