PXD048165-1

PXD048165 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Robust assessment of sample preparation protocols for proteomics of cells and tissues
Description	For proteomics studies, protein extraction and digestion protocols are essential steps to obtain reliable and reproductible results. Due to its importance and the different models of study in the proteomic field, we evaluated for THP-1 macrophages three well-established methods and, for liver tissue, two commonly used protocol for protein extraction with two lysis buffer options.
HostingRepository	PRIDE
AnnounceDate	2024-11-05
AnnouncementXML	Submission_2024-11-05_04:03:50.170.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Francielle Aguiar Gomes
SpeciesList	scientific name: Mus musculus (Mouse); NCBI TaxID: 10090; scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	No PTMs are included in the dataset
Instrument	Orbitrap Fusion Lumos

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2023-12-28 11:07:04	ID requested
⏵ 1	2024-11-05 04:03:50	announced

Publication List

10.1016/J.BBAPAP.2024.141030;

10.1016/J.BBAPAP.2024.141030;

Keyword List

submitter keyword: in-solution, sample preparation protocol, fasp,Shotgun proteomics, in-gel

submitter keyword: in-solution, sample preparation protocol, fasp,Shotgun proteomics, in-gel

Contact List

Graziella Eliza
contact affiliation	Universidade de São Paulo (USP)
contact email	ronsein@iq.usp.br
lab head
Francielle Aguiar Gomes
contact affiliation	Universidade de São Paulo
contact email	ellegomes06@usp.br
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/11/PXD048165
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/11/PXD048165

PRIDE project URI

Repository Record List

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