PXD048145-1

PXD048145 is an original dataset announced via ProteomeXchange.

Title	Intensity and retention time prediction improves the rescoring of protein-nucleic acid cross-links
Description	Rescoring of protein-RNA cross-links using retention time and intensity prediction.
HostingRepository	PRIDE
AnnounceDate	2025-11-24
AnnouncementXML	Submission_2025-11-24_01:06:43.807.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Timo Sachsenberg
SpeciesList	scientific name: Escherichia coli; NCBI TaxID: NEWT:562;
ModificationList	No PTMs are included in the dataset
Instrument	Orbitrap Exploris 480

Revision	Datetime	Status	ChangeLog Entry
0	2023-12-27 10:43:15	ID requested
⏵ 1	2025-11-24 01:06:44	announced

10.1002/PMIC.202300144;

submitter keyword: LC-MSMS,protein-RNA cross-links, Bottom-up proteaomics

Timo Sachsenberg
contact affiliation	Department of Computer Science, Applied Bioinformatics, University of Tübingen, Tübingen, 72076, Germany
contact email	timo.sachsenberg@uni-tuebingen.de
lab head
Timo Sachsenberg
contact affiliation	University of Tübingen
contact email	sachsenb@informatik.uni-tuebingen.de
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/11/PXD048145

PRIDE project URI

• PRIDE
  1. PXD048145
     1. Label: PRIDE project
     2. Name: Intensity and retention time prediction improves the rescoring of protein-nucleic acid cross-links