PXD047585 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Application of SWATH Mass Spectrometry and Machine Learning in Diagnosis of Inflammatory Bowel Disease Based on Stool Proteome |
Description | Our hypothesis was that conducting proteomic analysis on clinical laboratory samples which are intended for the fecal calprotectin test would enable the develop-ment of a highly sensitive and specific non-invasive stool test based on mass spec-trometry. To investigate this hypothesis, we combined and applied our expertise in basic research, clinical practice, and bioinformatics to develop a precise ma-chine-learning model for the accurate diagnosis of active IBD from symptomatic non-IBDpatients. |
HostingRepository | PRIDE |
AnnounceDate | 2024-02-01 |
AnnouncementXML | Submission_2024-02-01_14:16:11.944.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Elmira Shajari |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | carbamoylated residue; monohydroxylated residue |
Instrument | TripleTOF 5600 |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2023-12-06 16:07:59 | ID requested | |
⏵ 1 | 2024-02-01 14:16:12 | announced | |
Publication List
Keyword List
submitter keyword: Human, Inflammatory bowel disease., stool |
Contact List
Jean-Francois Beaulieu |
contact affiliation | Dep. immunology and cell biology, Faculty of Medicine and Health Sciences, Université de Sherbrooke, Canada. |
contact email | jean-francois.beaulieu@usherbrooke.ca |
lab head | |
Elmira Shajari |
contact affiliation | PhD candidate |
contact email | elmira.shajari@usherbrooke.ca |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/02/PXD047585 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD047585
- Label: PRIDE project
- Name: Application of SWATH Mass Spectrometry and Machine Learning in Diagnosis of Inflammatory Bowel Disease Based on Stool Proteome