PXD047126-1

PXD047126 is an original dataset announced via ProteomeXchange.

Title	Palaeoproteomic variation between cortical and trabecular bone
Description	Here we provide proteomic datasets of pairs of cortical and trabecular bone from six Early Holocene Caprinae rib fragments from the site of La Draga, Spain, using shotgun proteomics. Our observations on proteome size and protein, peptide, and amino acid degradation have implications for the sampling of archaeological skeletal remains in highly degraded proteomic contexts, where preference should be given to the sampling of cortical bone in order to maximise the retrieval of larger and better-preserved skeletal proteomes.
HostingRepository	PRIDE
AnnounceDate	2024-07-12
AnnouncementXML	Submission_2024-07-12_02:51:15.708.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Ragnheiður Diljá Ásmundsdóttir
SpeciesList	scientific name: Caprinae; NCBI TaxID: 9963;
ModificationList	2-pyrrolidone-5-carboxylic acid (Glu); hydroxylated residue; 2-pyrrolidone-5-carboxylic acid (Gln); monohydroxylated proline; deamidated residue
Instrument	Orbitrap Exploris 480

Revision	Datetime	Status	ChangeLog Entry
0	2023-11-21 07:09:15	ID requested
⏵ 1	2024-07-12 02:51:16	announced

10.1016/J.JASREP.2024.104643;

submitter keyword: shotgun proteomics, ZooMS, skeletal proteome variation,Palaeoproteomics, proteome preservation

Frido Welker
contact affiliation	Globe Institute, University of Copenhagen, Denmark
contact email	frido.welker@sund.ku.dk
lab head
Ragnheiður Diljá Ásmundsdóttir
contact affiliation	Globe Institute, University of Copenhagen
contact email	dilja@palaeome.org
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/07/PXD047126

PRIDE project URI

• PRIDE
  1. PXD047126
     1. Label: PRIDE project
     2. Name: Palaeoproteomic variation between cortical and trabecular bone