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PXD047060-1

PXD047060 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleProteome of GPKOW depleted cells with IAV infection, IFN or PPP-RNA treatment
DescriptionThe abundance of a protein is defined by its continuous synthesis and degradation, a process known as protein turnover. Here, we systematically profiled the turnover of proteins in influenza A virus (IAV) infected cells using a pulse-chase SILAC-based approach combined with downstream statistical modeling. We identified 1414 virus-affected proteins with turnover changes (tVAPs) out of 7739 detected proteins. In particular, the affected proteins were involved in RNA transcription, splicing and nuclear transport, protein translation and stability, and energy metabolism. Many tVAPs are known IAV-interacting proteins that regulate virus propagation, such as KPNA6, PPP6C and POLR2A. Notably, our analysis identified novel IAV host and restriction factors, such as the splicing factor GPKOW, that exhibit significant turnover rate changes, while their total abundance is not affected. Overall, we show that protein turnover is a critical factor both for virus replication and antiviral defense. The data presented here were used to study GPKOW's function in innate immunity.
HostingRepositoryPRIDE
AnnounceDate2025-04-09
AnnouncementXMLSubmission_2025-04-09_04:47:38.516.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterYiqi Huang
SpeciesList scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationListNo PTMs are included in the dataset
InstrumentQ Exactive HF
Dataset History
RevisionDatetimeStatusChangeLog Entry
02023-11-18 11:10:58ID requested
12025-04-09 04:47:38announced
Publication List
10.1016/J.CELS.2024.09.004;
Keyword List
submitter keyword: LC-MSMS, innate immunity,GPKOW, HeLa, A549
Contact List
Andreas Pichlmair
contact affiliationInstitute of Virology - Viral Immunopathology, Faculty of Medicine, Technical University Munich
contact emailandreas.pichlmair@tum.de
lab head
Yiqi Huang
contact affiliationTUM
contact emailyiqi.huang@tum.de
dataset submitter
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Dataset FTP location
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