PXD046455-2

PXD046455 is an original dataset announced via ProteomeXchange.

Title	Proteomics data of Escherichia phage vB_EcoS-EE09 isolated from wastewater treatment plant effluent and its infected and non-infected host E. coli DSM613
Description	This dataset was created to (i) compare the protein expression of E. coli DSM613 cells infected and uninfected with phage vB_EcoS-EE09 and (ii) detect structural proteins of phage vB_EcoS-EE09. Thus, this set provides proteomic data of three setups: 1. Uninfected E. coli DSM613 (file names [file ID]: 04_22A [F40]; 13_ecolicontrol_01 [F13]; 14_ecolicontrol_02 [F14]) 2. E. coli DSM613 infected with phage vB_EcoS-EE09 (file names [file ID]: 02_13A [F39]; 27_ecoliinfected_01 [F27]; 28_ecoliinfected_02 [F28]) 3. Cell-free phage lysate of phage vB_EcoS-EE09 (sample name: 01_EE09)
HostingRepository	PRIDE
AnnounceDate	2023-11-14
AnnouncementXML	Submission_2023-11-14_09:13:34.333.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD046455
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Simon Klaes
SpeciesList	scientific name: Escherichia coli; NCBI TaxID: 562; scientific name: Dhillonvirus; NCBI TaxID: 1623289;
ModificationList	iodoacetamide derivatized residue
Instrument	Orbitrap Fusion

Revision	Datetime	Status	ChangeLog Entry
0	2023-10-27 07:29:53	ID requested
1	2023-11-13 09:06:08	announced
⏵ 2	2023-11-14 09:13:34	announced	2023-11-14: Updated project metadata.
3	2024-10-22 06:14:00	announced	2024-10-22: Updated project metadata.

10.6019/PXD046455;

submitter keyword: Escherichia coli, shotgun proteomics, bacteriophage, Dhillonvirus, comparative proteomics,coliphage, strctural proteome

Lorenz Adrian
contact affiliation	Helmholtz Centre for Environmental Research - UFZ, Environmental Biotechnology and Technische Universität Berlin, Geobiotechnology
contact email	lorenz.adrian@ufz.de
lab head
Simon Klaes
contact affiliation	Helmholtz Centre for Environmental Research - UFZ
contact email	simon.klaes@ufz.de
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD046455

PRIDE project URI

• PRIDE
  1. PXD046455
     1. Label: PRIDE project
     2. Name: Proteomics data of Escherichia phage vB_EcoS-EE09 isolated from wastewater treatment plant effluent and its infected and non-infected host E. coli DSM613