PXD046334-1

PXD046334 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	AlMismar_extracellularTurboID_VS2_VS3_2023
Description	This dataset consists of 102 raw MS files and associated peak lists and result files, 24 acquired on a TripleTOF 6600 and 78 acquired on a TimsTOF pro mass spectrometer operated in Data Dependent Acquisition mode. Additionally, there are 6 raw files acquired on a TimsTOF pro mass spectrometer operated in Data Independent Acquisition. Sample generation, affinity purification and data analysis were done by Rasha Al Mismar. Sample acquisition was done by Rasha Al Mismar and Brendon Seale. Clones were generated by Payman Samavarchi-Tehrani and Rasha Al Mismar. The files are associated with a manuscript in Science Signaling by Al Mismar et al. that optimizes an extracellular BioID approach and identifies LDLR as an extracellular proximity partner of EGFR upon ligand stimulation. Anne-Claude Gingras is the corresponding author of the manuscript and should be contacted for questions on this dataset (gingras@lunenfeld.ca)
HostingRepository	MassIVE
AnnounceDate	2024-09-26
AnnouncementXML	Submission_2024-09-26_14:37:29.792.xml
DigitalObjectIdentifier
ReviewLevel	Non peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Gingras Lab
SpeciesList	scientific name: Homo sapiens; common name: human; NCBI TaxID: 9606;
ModificationList	deamidated L-asparagine; deamidated L-glutamine; acetylated residue; CarbamidomethylDTT; L-methionine sulfoxide
Instrument	timsTOF Pro 2; TripleTOF 6600

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2023-10-23 13:29:08	ID requested
⏵ 1	2024-09-26 14:37:30	announced

Publication List

no publication

no publication

Keyword List

submitter keyword: affinity purification, BioID, TurboID, proximity dependent biotinylation, proximal protein interaction, plasma membrane, extracellular space

submitter keyword: affinity purification, BioID, TurboID, proximity dependent biotinylation, proximal protein interaction, plasma membrane, extracellular space

Contact List

Anne-Claude Gingras
contact affiliation	LTRI
contact email	gingras@lunenfeld.ca
lab head
Gingras Lab
contact affiliation	Samuel Lunenfeld Research Institute
contact email	gingras@mshri.on.ca
dataset submitter

Full Dataset Link List

MassIVE dataset URI
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/v06/MSV000093178/

MassIVE dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/v06/MSV000093178/