PXD046334-1
PXD046334 is an original dataset announced via ProteomeXchange.
Dataset Summary
Title | AlMismar_extracellularTurboID_VS2_VS3_2023 |
Description | This dataset consists of 102 raw MS files and associated peak lists and result files, 24 acquired on a TripleTOF 6600 and 78 acquired on a TimsTOF pro mass spectrometer operated in Data Dependent Acquisition mode. Additionally, there are 6 raw files acquired on a TimsTOF pro mass spectrometer operated in Data Independent Acquisition. Sample generation, affinity purification and data analysis were done by Rasha Al Mismar. Sample acquisition was done by Rasha Al Mismar and Brendon Seale. Clones were generated by Payman Samavarchi-Tehrani and Rasha Al Mismar. The files are associated with a manuscript in Science Signaling by Al Mismar et al. that optimizes an extracellular BioID approach and identifies LDLR as an extracellular proximity partner of EGFR upon ligand stimulation. Anne-Claude Gingras is the corresponding author of the manuscript and should be contacted for questions on this dataset (gingras@lunenfeld.ca) |
HostingRepository | MassIVE |
AnnounceDate | 2024-09-26 |
AnnouncementXML | Submission_2024-09-26_14:37:29.792.xml |
DigitalObjectIdentifier | |
ReviewLevel | Non peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Supported dataset by repository |
PrimarySubmitter | Gingras Lab |
SpeciesList | scientific name: Homo sapiens; common name: human; NCBI TaxID: 9606; |
ModificationList | deamidated L-asparagine; deamidated L-glutamine; acetylated residue; CarbamidomethylDTT; L-methionine sulfoxide |
Instrument | timsTOF Pro 2; TripleTOF 6600 |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
---|---|---|---|
0 | 2023-10-23 13:29:08 | ID requested | |
⏵ 1 | 2024-09-26 14:37:30 | announced |
Publication List
no publication |
Keyword List
submitter keyword: affinity purification, BioID, TurboID, proximity dependent biotinylation, proximal protein interaction, plasma membrane, extracellular space |
Contact List
Anne-Claude Gingras | |
---|---|
contact affiliation | LTRI |
contact email | gingras@lunenfeld.ca |
lab head | |
Gingras Lab | |
contact affiliation | Samuel Lunenfeld Research Institute |
contact email | gingras@mshri.on.ca |
dataset submitter |
Full Dataset Link List
MassIVE dataset URI |
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/v06/MSV000093178/ |