PXD046005 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Effect of oxygen tension on MMTV-PyMT tumor cell kinome |
Description | Solid tumors are characterized by significantly lower oxygen (O2) levels. Despite this fact, routine preclinical cancer studies are performed under ambient O2 conditions. We have developed an experimental approach that allows us to collect, process and evaluate cancer and non-cancer cells under physioxia (3-5% O2), in such a way that there is very minimal exposure to air. We have shown in previous studies that ambient and physioxic O2 differentially impact relevant cell surface markers and sensitivity to therapy. In this study, our goal was to further explore oxygen-dependent signaling pathway alterations and to determine how these pathways influence response to targeted therapies. Using cells derived from transgenic mouse mammary tumors and healthy primary human breast epithelial cells, we show the impact of ambient air and physioxia on the kinome, with subsequent pathway alterations that mediate the effectiveness of single and combination therapies. Our data emphasize the importance of O2 considerations in preclinical cancer research and drug development. |
HostingRepository | PRIDE |
AnnounceDate | 2024-05-08 |
AnnouncementXML | Submission_2024-05-08_08:33:16.514.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Steven Angus |
SpeciesList | scientific name: Mus musculus (Mouse); NCBI TaxID: 10090; |
ModificationList | acetylated residue; iodoacetamide derivatized residue |
Instrument | Q Exactive HF |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2023-10-09 15:31:37 | ID requested | |
⏵ 1 | 2024-05-08 08:33:16 | announced | |
2 | 2024-10-22 06:38:33 | announced | 2024-10-22: Updated project metadata. |
Publication List
Dataset with its publication pending |
Keyword List
submitter keyword: ambient,breast cancer, kinase inhibitor beads, physioxia, lapatinib |
Contact List
Hari Nakshatri, PhD |
contact affiliation | Indiana University School of Medicine |
contact email | hnakshat@iupui.edu |
lab head | |
Steven Angus |
contact affiliation | Indiana University School of Medicine |
contact email | sangus@iu.edu |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD046005
- Label: PRIDE project
- Name: Effect of oxygen tension on MMTV-PyMT tumor cell kinome