PXD045899 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | The Proteomic Landscape of in vitro Cultured Endothelial Cells across Vascular Beds |
Description | Blood vessel endothelial cells (EC) display heterogeneity across vascular beds, which is at the bases of organ specificity and anticipated to drive site-specific vascular pathology. It is assessed in vivo using transcriptomics, and in vitro using functional assays, but how proteomes compare across human in vitro cultured ECs remains incompletely characterized. We generated an in-depth human EC proteomic landscape (>8000 proteins) across 6 vascular beds and 2 in vitro models both in steady-state and upon IFNγ-induced inflammation. EC proteomes displayed a high similarity and organ specific proteins were limited. Variation between ECs and donors was mainly based in biological processes underlying proliferation and differentiation. BOECs and HUVECs represented the extremes of proteomic phenotypes. IFNγ responses were highly conserved across cellular sources. Harnessing dynamics in protein abundances we delineated interactor networks of VWF and VE-Cadherin. This EC landscape provides an extensive proteomic addition in studying EC biology and heterogeneity from an in vitro perspective. |
HostingRepository | PRIDE |
AnnounceDate | 2024-07-25 |
AnnouncementXML | Submission_2024-07-25_10:02:41.116.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Stijn Groten |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | No PTMs are included in the dataset |
Instrument | Orbitrap Fusion Lumos |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2023-10-04 07:24:01 | ID requested | |
⏵ 1 | 2024-07-25 10:02:41 | announced | |
Publication List
Dataset with its publication pending |
Keyword List
submitter keyword: in vitro, cardiac, brain, aorta, lung, liver, kidney, boec, huvec,Endothelial cells |
Contact List
Maartje van den Biggelaar |
contact affiliation | Department of Molecular Hematology, Sanquin Research, Amsterdam 1066CX, the Netherlands |
contact email | m.vandenbiggelaar@sanquin.nl |
lab head | |
Stijn Groten |
contact affiliation | Sanquin Research |
contact email | s.groten@sanquin.nl |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/07/PXD045899 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD045899
- Label: PRIDE project
- Name: The Proteomic Landscape of in vitro Cultured Endothelial Cells across Vascular Beds