PXD045510-1

PXD045510 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Flash proteotyping of microbial isolates by tandem mass spectrometry
Description	Flash proteotyping is a methodology for ultra-fast identification of microorganisns by tandem mass spectrometry. Here, we obtained results on five reference strains and ten new bacterial isolates. The methodology is based on direct sample infusion into the mass spectromete and an original, highly sensitive procedure for data processing and taxonomic identification.
HostingRepository	PRIDE
AnnounceDate	2023-12-21
AnnouncementXML	Submission_2023-12-21_14:34:54.739.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD045510
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Jean ARMENGAUD
SpeciesList	scientific name: Roseomonas mucosa; NCBI TaxID: 207340; scientific name: Deinococcus proteolyticus MRP; NCBI TaxID: 693977; scientific name: Kocuria rhizophila; NCBI TaxID: 72000; scientific name: Pseudomonas zeshuii; NCBI TaxID: 1076620; scientific name: Microvirga ossetica; NCBI TaxID: 1882682; scientific name: Ruegeria pomeroyi DSS-3; NCBI TaxID: 246200; scientific name: Pseudomonas putida KT2440; NCBI TaxID: 160488; scientific name: Paenibacillus catalpae; NCBI TaxID: 1045775; scientific name: Micrococcus luteus (Micrococcus lysodeikticus); NCBI TaxID: 1270; scientific name: Staphylococcus equorum; NCBI TaxID: 246432; scientific name: Staphylococcus warneri; NCBI TaxID: 1292; scientific name: Klebsiella aerogenes KCTC 2190; NCBI TaxID: 1028307; scientific name: Pseudomonas psychrotolerans; NCBI TaxID: 237610;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Orbitrap Exploris 480

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2023-09-20 02:46:54	ID requested
⏵ 1	2023-12-21 14:34:55	announced

Publication List

10.6019/PXD045510;
10.1002/PMIC.202300372;

10.6019/PXD045510;

10.1002/PMIC.202300372;

Keyword List

submitter keyword: Taxonomy,Proteomics, isolates, Proteotyping, Bacteria, Identification

submitter keyword: Taxonomy,Proteomics, isolates, Proteotyping, Bacteria, Identification

Contact List

Jean Armengaud
contact affiliation	CEA-Marcoule, ProGenoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Ceze, France
contact email	jean.armengaud@cea.fr
lab head
Jean ARMENGAUD
contact affiliation	Li2D
contact email	jean.armengaud@cea.fr
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/12/PXD045510
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/12/PXD045510

PRIDE project URI

Repository Record List

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