PXD045402-1

PXD045402 is an original dataset announced via ProteomeXchange.

Title	COL1A2 Barcoding: Bone Species Identification via Shotgun Proteomics
Description	Species identification of fragmentary bones remains a challenging task in archeology and forensics. A species identification method for such fragmentary bones that has recently attracted interest is the use of bone collagen proteins. We developed a method similar to DNA barcoding that reads collagen protein sequences in bone and automatically determines the species by performing sequence database searches. We tested our method using bone samples from 30 vertebrate species ranging from mammals to fish.
HostingRepository	PRIDE
AnnounceDate	2023-12-14
AnnouncementXML	Submission_2023-12-13_22:23:34.183.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Kei Taniguchi
SpeciesList	scientific name: Paralichthys olivaceus; NCBI TaxID: 8255; scientific name: Anas platyrhynchos; NCBI TaxID: 8839; scientific name: Oryctolagus cuniculus (Rabbit); NCBI TaxID: 9986; scientific name: Oncorhynchus mykiss (Rainbow trout) (Salmo gairdneri); NCBI TaxID: 8022; scientific name: Equus caballus (Horse); NCBI TaxID: 9796; scientific name: Salmo salar (Atlantic salmon); NCBI TaxID: 8030; scientific name: Coturnix japonica; NCBI TaxID: 93934; scientific name: Capra hircus (Goat); NCBI TaxID: 9925; scientific name: Columba livia; NCBI TaxID: 8932; scientific name: Bos taurus (Bovine); NCBI TaxID: 9913; scientific name: Phasianus colchicus; NCBI TaxID: 9054; scientific name: Thunnus albacares; NCBI TaxID: 8236; scientific name: Ursus arctos (Brown bear) (Grizzly bear); NCBI TaxID: 9644; scientific name: Mus musculus (Mouse); NCBI TaxID: 10090; scientific name: Cyprinus carpio (Common carp); NCBI TaxID: 7962; scientific name: Lithobates catesbeianus; NCBI TaxID: 8400; scientific name: Ovis aries; NCBI TaxID: 9940; scientific name: Rattus norvegicus (Rat); NCBI TaxID: 10116; scientific name: Sus scrofa domesticus (domestic pig); NCBI TaxID: 9825; scientific name: Pelodiscus sinensis; NCBI TaxID: 13735; scientific name: Seriola dumerili; NCBI TaxID: 41447; scientific name: Crocodylus porosus; NCBI TaxID: 8502; scientific name: Numida meleagris; NCBI TaxID: 8996; scientific name: Cervus elaphus (Red deer); NCBI TaxID: 9860; scientific name: Takifugu rubripes; NCBI TaxID: 31033; scientific name: Thunnus maccoyii; NCBI TaxID: 8240; scientific name: Gallus gallus (Chicken); NCBI TaxID: 9031; scientific name: Xiphias gladius; NCBI TaxID: 8245; scientific name: Struthio camelus (Ostrich); NCBI TaxID: 8801; scientific name: Oreochromis niloticus; NCBI TaxID: 8128;
ModificationList	monohydroxylated residue; deamidated residue
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2023-09-14 20:11:07	ID requested
⏵ 1	2023-12-13 22:23:34	announced

10.1021/ACS.JPROTEOME.3C00615;

submitter keyword: PROTEIN barcoding,species identification, SEQUEST, COL1A2

Hajime Miyaguchi
contact affiliation	National Research Institute of Police Science
contact email	miyaguchi@nrips.go.jp
lab head
Kei Taniguchi
contact affiliation	National Research Institute of Police Science
contact email	taniguchik@nrips.go.jp
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/12/PXD045402

PRIDE project URI

• PRIDE
  1. PXD045402
     1. Label: PRIDE project
     2. Name: COL1A2 Barcoding: Bone Species Identification via Shotgun Proteomics